Bioinformatics part 7 How to perform Global alignment 1
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- Опубликовано: 5 окт 2024
- This Bioinformatics lecture explains how to perform global sequence alignment with sample example problem. Watch this video to understand the process of sequence alignment in details.
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In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix. Gaps are inserted between the residues so that identical or similar characters are aligned in successive columns.
Global alignments, which attempt to align every residue in every sequence, are most useful when the sequences in the query set are similar and of roughly equal size. (This does not mean global alignments cannot end in gaps.) A general global alignment technique is the Needleman--Wunsch algorithm, which is based on dynamic programming. Local alignments are more useful for dissimilar sequences that are suspected to contain regions of similarity or similar sequence motifs within their larger sequence context. The Smith--Waterman algorithm is a general local alignment method also based on dynamic programming.
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@eesha riaz here we're aligning the sequences not making complementary sequences like in the DNA. It's a different thing
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Thank you so much your patience in explaining this so thoroughly is the ONLY reason I understand this.
The Video is Lengthy. But a great explanation. Thanks. Probably the best on youtube
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Thank you. Glad you liked my lectures
Thank you very much for a VERY CLEAR AND DETAILED EXPLANATION! You helped me understand this! I don't mind some of your unnecessary details. What's important is you are trying your best to make sure that we all get the points of this complicated concept. Keep up the good work. You are the man!
I think he is funny with this unnecessary talking. But it also has advantage. This way concept gets more hardwired in brain because of repetition.
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You're welcome. Glad to hear that you're getting benefit from my lectures
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i dont know what to say, i have 4 days left to start my semester.. i thought of leaving this topic.. bt you really help me a lot.. THANK YOU..
I didn't know that it was this easy!! My professor didn't explain it like this, thank god i found you sir!! I am beyond grateful!!
Amazingly helpful! I don't know why our teachers can't explain as you do. LOVE!!!
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Sir its 2023 and you made this video 10 years back and see sir its useful to us even now... Thank you so much sir❤
You're welcome. All the best
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Clear explanation. Most probably, this is the best lecture on this particular topic.Thank you very much for your patience.
Currently i m doing my MS molecular biotechnology in Germany. I face problem in this topic , your video just saved me. best wishes for your future and please keep going such teaching.
The best video for the global alignment that i watched 🥺❤️❤️❤️. Thank youu 🙏❤️
Thank you so much for appreciating my efforts
The explanations are so good and easy to grasp. Thank you so much!!
You're welcome. Glad to hear that you're getting benefit from my lectures
Thankyou sir for such an easy understanding video👍
Tomorrow is my test and finally i learnt the global alignment sequence via this video.
Thanks alot🌸🌸
You're welcome. Glad to hear that you're getting benefit from my lectures
Wow, this is actually much less confusing than I thought it was.Well explained, thanks!
the best channel and the best explanation of concepts.
Thank you so much for appreciating my efforts
Thankyou sir, you are a life saver. I have my bioinformatics practical exams today, it'll be really useful
Thank you so much for appreciating my efforts. Glad to hear that you're getting benefit from my lectures
Thank you for your clear explanation. Your lecture always help me prepare the exams. For undergraduate students like me, explanation without much details helped me understand better for the application of rules.
Thank you!!!!!!!!!! i failed 2 quizzes because i didn't understand but now I'm going to kick butt in the midterm
your teaching method is very good when i face any difficulties in my study then i watch your lecture to understand. thank you so much for helping us
did you know that I spent like a month understanding this part ..... in several places? I just want to say many many thanks. you are amazing
Thank you so much for appreciating my efforts
u saved me ..seriously i didnt even expected that it would b this simple i was really confused with d first step itself....but after watching this m all set for my test thank u
Video is nice. In case of global, we don't for highest value but for uppermost right value (whatever it is) then traces back. While in local, we search for highest value of matrix
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Lots of thanks from assam ...you helped me a lot ....🙏I didn't understand this algorithm bt now it is clear
THANK YOU VERY MUCH, IT REALLY HELPED ME UNDERSTAND THE TABLE BETTER.
that was some godly explanation
Thank you
Thank you, I really had hard time understanding this concept, tommorow my university exam. I could learn in no time. Thanks to you
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Sir I don't have words to appreciate you but thanks for making this crystal clear❤
You're welcome
I couldn't stop myself from thanking you, brother. Thank you so much for making the concept clear and such simple, I wonder, I knew this in such a simple way, and this is all possible all because of you. Thank you so much brother. Lot's of love from Nepal ❤❤
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Sir you're only one solution for biotechnology students thanks very much sir...💕
Great video! Has aided me in my senior bioinformatics course. Thank you!
+DaviD00H thank you. Glad you liked my lectures
If we use SmithWaterman algorithm to align two sequences. At the end the traceback result is of the form
A C C G T -
A C - G T G
PLS What is the interpretations of the sequences obtained after the traceback.
Best video on global alignment for a biology student. thank you
You're welcome. Glad to hear that you're getting benefit from my lectures
Highly appreciated Sir...at frst i thought its useless to watch but trace back step was a wonder....
You're welcome. Glad to hear that you're getting benefit from my lectures
Bcz this is the only video on utube which really helps me to understand global alignment
Glad you liked my lectures
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I love u sir and all the biotech student in our collage follows your lecture even once got air gate rank 357 from your help
Thank you so much sir your videos really erased all of my doubts and made me understand the concept clearly. ❤
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Thanku sooo much sir... .... Your vedio is worth a million dollar... Only after seeing it I understood the concept
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Great lesson, perfectly explained. Thank you!
Thank you bro. You explained it much more easier than my professor :)
Beautifully explained by you sir 🙏
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Thank you so much sir. You made it so easy to understand
You're welcome. Glad to hear that you're getting benefit from my lectures
Thank you so much sir,really helpful for my mid-term exam!
Still the best video on youtube on this topic. Thanks so much
❤❤ exam in few hours,😢,, so lucky 😊I saw this ,,,so helpful ,,, thank you sir
You're welcome. Glad to hear that you're getting benefit from my lectures
A very clear explanation, you have helped me a lot ! thank you and hats off!!
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man, you're a lifesaver! thank u so much for your efforts this was explained so well!
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Without your teaching I'm nothing thanks a lot 🤩
Glad to hear that you're getting benefit from my lectures
Thank you. What a wonderful explanation to a complicated concept.
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Very well explained, this helped me a lot. Thank you!
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@@shomusbiologyofficial all the best wishes to you. Here's hoping to learn a lot more in the future.
Love you 3 billion base pair times sir♥️😅 u r an artist the way u express your knowledge is an art tysm for explaining this topic
He explained it so nicely, and I didn't get bored while watching it though the video is long.
Thank you
@@shomusbiologyofficial you're welcome
You did an excellent job explaining this. Thank you very very much!!
You're welcome. Glad to hear that you're getting benefit from my lectures
It is the best tutorial. You are much more good then my professor.
I learnt something new. Thank you.
You taught small details also and makes it easy to understand.
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AGGC?
Thank you so much! 2 hours from my exam this helped a lot
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Stupendo. Thank you from Italy.
Thank you. Glad you liked my lectures
I understood this better explained in english by this man, than from my teacher in my native languaje.
Thank you
Thank you so much for your video. It has helped a lot.
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sir je nice ,simple -best video,awesome .salute to your work A+ love from Pakistan
You gave an excellent lecture on global alignment here, sir.
Thank you
Thank you! You explained this better than my university professor!!
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Thank you
Thank you so much sir for uploading this video in the most understandable way. You explained it soo soo well sir. Thank you so much and all the best for upcoming videos.
Thank you
Amazing . You made it soo easy.
Thank you
thank you so much. it's very very easy to understand
You're welcome. Glad to hear that you're getting benefit from my lectures
That was very, very helpful. Made it much more understandable.
made my alignment class super easy , thank you for the video
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Fantastic video. Very thorough and helpful. Thanks very much!
Hats off Bro . You Save me.
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you just saved me man thank you
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Vai, your videos are such a blessing😀😀 you always make clear basic about every topic.
Simple and clear. Thank you
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This bioinformatics algorithm was explained by my professor so poorly that I had to come here to watch shomu sir's video.🥺🥺 thankyou so much sir for existing.
thank you so much. it is clairely explained
Thank you so much for appreciating my efforts
Thankyou so much sir ...may god bless you
Thank you for appreciating my efforts
Superb explanation. Thank you.
You're welcome. Glad to hear that you're getting benefit from my lectures
During trace back why do we stop in -2 insted of 0 ? Because the rule was From the higeht value back into the 0
Backtracking:
Starting from the bottom-right corner of the matrix, follow the path that leads to the top-left corner while keeping track of the alignment.
If you move diagonally and the characters at the current positions match/mismatch, add the match/mismatch score to the similarity score.
If you move vertically or horizontally, add the gap penalty to the similarity score.
Excellent explanation..... Hands off brother!!!
Thank you. Glad you liked my lectures
Nice explanation sir...easy to understand.
You're welcome. Glad to hear that you're getting benefit from my lectures
you have made it very clear and understandable. thank a lot
however you can wrap it up in 20 min easily instead of 30min
Thank you so much you're a life saver! My professor gave us this bioinformatics homework and I had no idea how to do it. You made it very clear to me as to what had to be done. I will definitely be watching the next video (:
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+Tina Rey Santos glad it helped
Sir plz share video on Needle wunsh Algorithm ,
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Plz share above said topic vedio
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Glad to hear that you are getting benefit from the lectures
Thank u so much sir 4 excellent explaining I m in trouble for this sequence but u r best Allah bless u hmesha
thnk u so much my concepts got cleared n ur teachin is simple n awsum..thnk u once again
Blessed💫found ur video🤩thankyou so much Sir💫
thanxs sir i had no knowledge about bioinformatics.thanx to make my concept clear.thanx