Molecular Dynamics in 5 Minutes

This is a 5 minutes introduction to molecular dynamics simulation.
Tools to generate initial state for your system:
- LAMMPS lattice command: This command creates a 2D or 3D lattice. It supports a number of lattice types.

[@aurelioantoniovivasmeza956]

Congratulations, I have been spent a half of my master degree looking for a video like this !!!!

[@jovanbebis6888]

whats ur study???

[@aurelioantoniovivasmeza956]

@@jovanbebis6888 Computers science with focus in high performance computing

[@jovanbebis6888]

@@aurelioantoniovivasmeza956 did u know about thin film deposition using MD simulations?

[@aurelioantoniovivasmeza956]

@@jovanbebis6888 Not realy, I am just suppoting the parallel execution of MD simulations in HPC clusters.

[@imago6116]

Wish you posted more videos about it. You are a great teacher!

[@agnidhragain]

Thank you so much for explaining for the beginners. It was so understandable!

[@Korento]

Very concise and useful. Thank you, sir!

[@oswaldojoseerazopuentes8426]

Very nice explanation. I really enjoyed it!

[@realarfin.raihan134]

So informative and helpful for the hesitant beginners...

[@ashwinshetty1598]

Hi, can you recommend MDS softwares with MM2 for simulation of bonding of chemical compounds of interest with the stationary phase for chromatographic analysis

[@jonathanwoolloff2300]

Thanks for explaining so clearly

[@SujithSNair-te1nl]

simple and excellent presentation !!

[@yongfengding2603]

thanks for the introduction.

[@TheSpinninHead]

Thanks for this useful and precise video.. I have one question: What potential should be used when we study hydrogen adsorption on another nano-cluster? In this case it seems like bonded potential should be for the nano-cluster and non-bonded potential for hydrogen molecules. Please clarify.

[@cocoslover100]

Simple and clear

[@huheborjikhan6034]

great job, thx
I have a question, how to chose the time step. How to check collision ...
Thx again

[@kritialam9404]

Great one man

[@Proactive_nuel]

Thank you for this video, you explained it so well. I want to know more about MD simulations

[@abcd-gp6is]

Thank you ❤️

[@abhishekanand4164]

Kindly explain more simmulations on LAMMPS. There is almost negligible resources available online

[@sudarshanlamichhane9303]

thank you

[@user-in3kh6uc8c]

Hello sir; where can I download this program ?

[@shaguftaakhtar6071]

thank you.Iis this software run on mabcook ?

[@salsh7987]

Well presented

[@zhigao6081]

will you share the matlab code?

[@kelvin9609]

Please can someone help teach me how to use this with lammps

[@WaqarAhmed-bt5pu]

Nice explanation of MD. Create videos on VASP for beginners.

[@kelvin9609]

How can I write molecular dynamics code

[@Proactive_nuel]

please could you post more videos?

[@mosta5]

Great explanation man, why did yoy stop posting in this channel ?

[@swapnilbhavsar7188]

Thanks for the explanation! As I am a beginner in MD Simulations, I wanted someone to recommend me an MD Software that I can use. Freeware would be more preferred

[@mdsimulators5475]

Thanks for your message. For MD simulations LAMMPS and Gromacs are both good software (depending on the application one can be better than the other). They are both open source and free as well. I have another video where I explain how to start a simulation with LAMMPS.

[@lazher2]

@@mdsimulators5475 What about Castep software and Ansys software ?

[@abhishekanand4164]

What about next videos

[@RakeshBhowmick]

Can I run a simulation of 50k atom in my desktop pc having i5 processor for 20ns

[@whatsmyname5058]

it's a matter of time I think

[@Painting_Nicely_With_Me]

Not at all!

[@RajChawla]

Not possible I used a workstation i7 64 GB RAM but it started showing problems around 25k atoms

[@MudassarAliKhan]

Just try to run 1 ns simulation first and then you will get your answer.

[@scienceaddicted3431]

energy minimizations will run without problem, but simulations will be problematic. Maybe if you include some GPU nodes, that could help, but on CPU only, it is cumbersome

[@hyvaihminen]

thanks im professor now