This looks promising，can you please do a video on the manipulation of RNA seq data from TCGA or GEO, and the subsequent PCA and UMAP analysis with gene annotations and maybe DEG analysis and gene set enrichment analysis as well ? Thank you in advance 🙏🙏🙏
Thanks for commenting, next videos would be relevant to RNA seq and its associated analyses. Don’t forget to check already available videos about PCA and enrichment analysis conducted through iDEP.
dear sir out of box i have a query, is there any way by which i can convert the ensemble transcript id into a single protein coding refseq match directly. Though sir i used bioDBnet to convert the transcript to gene id but, on doing that im getting many output including the XP also. It is very tedious to search each and every gene in Ensembl and its refseq match.
Ahhh, i am not sure about this. you can use specialized bioinformatics tools or software designed for molecular visualization, such as PyMOL, Chimera, or UCSF ChimeraX, which offer more advanced features for creating detailed molecular diagrams.
Thank you.great video
Glad you like it
This looks promising，can you please do a video on the manipulation of RNA seq data from TCGA or GEO, and the subsequent PCA and UMAP analysis with gene annotations and maybe DEG analysis and gene set enrichment analysis as well ? Thank you in advance 🙏🙏🙏
Thanks for commenting, next videos would be relevant to RNA seq and its associated analyses. Don’t forget to check already available videos about PCA and enrichment analysis conducted through iDEP.
Transcriptomics & Proteomics
ruclips.net/p/PL3fbGvDVm3uspnyI1_RVNtdPDyvInHh1t
Please make videos on linkage disequilibrium analysis, kinship analysis and visualizing with heatmap in R
Thanks for suggestion Obaid, i have noted down your topics, please stay tuned
dear sir out of box i have a query, is there any way by which i can convert the ensemble transcript id into a single protein coding refseq match directly. Though sir i used bioDBnet to convert the transcript to gene id but, on doing that im getting many output including the XP also. It is very tedious to search each and every gene in Ensembl and its refseq match.
Sorry me too don’t know
Can it be used to find KEGG pathways from a gene list which are involved in those pathways? If yes, please make a video brother.
Thanks for suggesting a potenital topic, i have added it into the list. Stay tunned
Hi Sir, can we use this for DNA methylation data. I am struggling with the analysis and visualisation for DNA methylation data.
I never tried DNA methylation data on this, so i am not sure
Can we use it for understanding graphs and figure of research articles
Yes you can lower QnA box to interpret whatever is generated at each chunk through RTutor.AI
Sir is there any tool for finding rna binding motif in a protein, if so can you make a tutorial on that
Memesuit and graphprot
Sure i will record a tutorial soon
Can we create antibodies or aptamers diagrams etc
Ahhh, i am not sure about this. you can use specialized bioinformatics tools or software designed for molecular visualization, such as PyMOL, Chimera, or UCSF ChimeraX, which offer more advanced features for creating detailed molecular diagrams.