ImageJ/Fiji Macro Language - [NEUBIASAcademy@Home] Course
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- Опубликовано: 21 окт 2024
- ImageJ Macro Language is an easy-to-learn scripting language built into ImageJ/Fiji. This video shows how to use it to automate image processing/analysis workflows.
Material:
github.com/ahk...
Please post questions related to the material on:
forum.image.sc...
Content:
0:03:57 Workflow to get outline of nuclear membrane and measure.
0:10:24 ImageJ Macro Recorder and Batch Processor
0:22:35 Variables - Theory
0:37:22 Built-In Macro Functions
0:45:04 Ask for User Input
0:51:04 For-Loops
1:07:17 Batch-Processing
1:09:02 Arrays - Theory
1:20:27 If-statements
1:25:51 Good Practice
1:28:10 Where to continue
Author:
Anna Klemm, BioImageInformatics Facility, SciLifeLab, Sweden
Given as a interactive course 14th/15th of April 2020 at NEUBIAS Academy together with Christian Tischer (EMBL Heidelberg), Fabrice Cordelières (BIC, Univ. Bordeaux), Ofra Golani (Weizmann Institute, Rehovot), Romain Guiet (EPFL, Lausanne), Bram van den Broek (NKI, Amsterdam), Elnaz Fazeli (Turku University), and Rocco d’Antuono (Francis Crick Institute, London).
Thank you very much. I have watched a lot of Imagej tutorials on RUclips and your lecture was one of the best. You break down the steps of workflow very nicely. I really appreciate you sharing this recording.
Very well explained and very useful, thank you so much. It would be even better if you include your final macro in the comment section (it would be useful to check for mistakes when writing our own macros). Thanks again
This was well done and useful. Look forward to additional videos from Neubias
Great and intelligible course. I will recommend the video for my colleagues.
All the best!
Great explanation! I am going to start to implement it immediately in my image analysis practice, thank you a lot :)
This was gold! Thank you!
Thank you very much. Excellent video.
Very well explained. Thank you
Very useful! Thank you so much.
This was a great video!! Thanks you!
If you click on this link it will download the example data and the macros: github.com/ahklemm/ImageJMacro_Introduction/archive/master.zip
How do you get your editor so beautiful, my editor looks very basic