QuPath for Beginners

QuPath for Beginners | Fiona Inglis | October 29th, Virtual I2K 2024
Authors: Fiona Inglis, University of Edinburgh
Peter Bankhead, University of Edinburgh
Alan O'Callaghan, University of Edinburgh
Laura Nicolás Sáenz, University of Edinburgh
Léo Leplat, University of Edinburgh
Description: QuPath is a popular open-source platform for visualizing, annotating and analyzing complex images - including whole slide and highly multiplexed datasets. It's especially useful for digital pathology applications, but can also be used for a wide range of other tasks (albeit mostly 2D... for now).
This work will introduce QuPath's main features, concepts and interface. It will show examples of problems QuPath can solve well on its own, as well as introduce the idea of scripts, extensions and integrations that can help integrate QuPath into more complex workflows when needed.
Keywords: qupath, pathology, whole slide, microscopy, brightfield, multiplexed, interactive machine learning