Browsing SNPs and Copy Number Variation in Ensembl

Short sequence variants such as Single Nucleotide Polymorphisms (SNPs) and larger structural variants like Copy Number Variation (CNVs) can be viewed in the Ensembl browser (www.ensembl.org). This video shows you how to view short variants along the sequence, how to view larger scale variations for a gene, and brings you to a region of the genome. Specific variation data sets like 1000 Genomes populations are explored. We end with the variation tab; a wealth of information about one sequence variant. This video uses release 66, Feb, 2012 (Feb2012.archive...).

[@GurvinderSingh-xp1hq]

Very informative, Thank you so much!!!

[@amorinho14gmail.]

Wonderful

[@MohammadMahmoud-ji1jc]

how to design tetra primer ARMS PCR, please?

[@I.B1]

Thank you :)

[@KNUSY_YT_PRO_BOYS]

how can we compare two genotype SNPs obtained from GBS analysis. what comparasions should be made

[@EnsemblHelpdesk]

We have genotypes available for individuals from the 1000 Genomes dataset for human and some strains for other species. www.ensembl.org/Homo_sapiens/Variation/Sample?db=core;r=9:22125004-22126004;v=rs1333049;vdb=variation;vf=302523426
If you're looking to compare your own samples, you may wish to run them through the VEP.

[@patrickekeh5254]

i wish one could have an icon for downloading the videoso we can archive.

[@rooniegggg]

hello to add mine bam file then any idea plz help me out

[@EnsemblHelpdesk]

Check out our video on attaching custom data: ruclips.net/video/S5O4k7XSpI0/видео.html

[@brokenlove7342]

plz hindi vedio jld bnaiyena

[@EnsemblHelpdesk]

I've turned on Community Contributions for closed captioning. We welcome anyone who wants to subtitle our videos in another language. Unfortunately, we cannot make our training materials in every language on Earth, so we just stick to the international language of science.