How to Prepare Input Files & Run Any Liquid Simulation with LAMMPS/GROMACS using OPLS force field

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  • Опубликовано: 26 янв 2025

Комментарии • 5

  • @skavud1
    @skavud1 6 дней назад

    Where can I find information about the types of available force fields?

  • @skavud1
    @skavud1 6 дней назад

    How do you create a LAMMPS data file with multiple types of molecules? For example, how do you create a LAMMPS data file with 100 molecules of dimethylformamide and 20 molecules of dimethylsulfoxide?

  • @AmanGovindSoni5-YearIDDChemist
    @AmanGovindSoni5-YearIDDChemist 7 месяцев назад

    Touluene: avg. density = 0.016 g/cm^3 && error in density = 98.177%
    Probably did something very wrong :/
    I did everything the same except creating a sample_outputs/ directory to store the results
    Error could be with the equil.inp file; what is the overlap=0.2 ?
    Also I'm unable to view the dcd files using: mol load dcd etho_npt.dcd
    Would you be releasing the solutions on your github repo?

    • @AmanGovindSoni5-YearIDDChemist
      @AmanGovindSoni5-YearIDDChemist 7 месяцев назад

      Touluene avg. density = 0.826 && error in density = 4.618%
      P.S. I converted the num = round() function to math.floor() function