Multiple Sequence Alignment
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- Опубликовано: 25 авг 2024
- An exercise on how to produce multiple sequence alignments for a group of related proteins. Produced by Bob Lessick in the Center for Biotechnology Education at Johns Hopkins University. http:--advanced.jhu.edu-academics-centers-center-for-biotechnology-education-
This was extremely helpful. Had no idea how to input the sequence data. Even though I'm working with nucleotide sequences, it was extremely helpful!
That tip about multi-fasta is going to be so useful. Had no idea you could do that.
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Thank you so much, from about 7mins you told what the dots and * mean and that was enough for me to understand my Homework. THANK YOU!!!!!!
you absolutely deserve a very very big Thump-Up, Thanks a million
Thank you very much for posting this video! It helped a lot!
i realize I'm kinda randomly asking but does anyone know a good place to stream newly released series online?
@Shepherd Theo i watch on FlixZone. Just search on google for it =)
It is extremely helpful! Most of all, servers you used were up to date!
Very clear and informative! Thank you so much!
You are a LIFESAVER!
Hey! Thanks so much for this video! I found it EXTREMELY helpful. If you can, can you please do a tutorial on how you would create a phylogenetic tree using the sequences. Also, what programs will you recommend for this?
Thank you for this video!
Thank you so much for this video
THANK YOU !!! this is very informative and useful
Thank you so much!
Is there a way to automate this for - let's say - 300 sequences?
I would need these MSA for evolutionary conservation scoring of amino acid residues (e.g. Rate4Site) [Any better idea?]. I have some motifs, that appear very diverse. For validation, we would like to filter for some measure of biological significance.
Anybody? Any idea?
Where did you find the accession numbers for Danio rerio and Drosophila melanogaster? I cannot find them in the organism report. Help me please
Thanks for the tutorial. I'm looking for a way to shade the consensus-matching AA letters in the black, positive ones in gray and different ones have to shade. Have you happened to come cross any tool to provide such style? Thanks.
thank you so much for this video
Does anyone know a way that you can replace the acession number with the name of the organism the protein comes from?
How can we do multiple sequence alignment of whole genome of a bacterium
I am trying to compare protein sequences from ebola taken from each timepoint during the ebola outbreak, so far I have collected sequences from spike glycoproteins.What tool can i use to compare them, I have tried aligning but there are too many sequences to handle.What can I use to give me a clear picture of any mutational changes or if the virus has evolved.
How did you copy the accession numbers into the notepad?
Ctrl+C Ctrl+V
Thank you
Thank you so much
Thanks!
really very helpful! Thanks :)
Thankyou!
i m computer science student. i want to do research in bioinformatics with data mining concepts. could u please suggest the topic ?
Sir,I liked this lecture.could u tell me how do we get STOCKHOLM file format like "PF05371_seed.sth" in biopython. iam getting txt file of it. I want sth file to learn programming in Biopython.
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How can i contact you sir?
Anyone has done MSA in hadoop here !
Thank you