How to make automatic montage in Fiji | How to arrange microscope images in ImageJ

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  • Опубликовано: 24 авг 2024
  • This video shows how to convert zstack images to montage with a single click in imageJ
    #ImageJannotation

Комментарии • 16

  • @britneyb.1993
    @britneyb.1993 9 месяцев назад +1

    Thank you for making this video! Its helping me so much as a 2nd year master's candidate!!

    • @AliceritaE
      @AliceritaE  9 месяцев назад

      You're welcome, Britney!

  • @Biojohn1983
    @Biojohn1983 11 месяцев назад +1

    OMG! Thank you very much for your video, I am super excited to show my images with this method! Thank you for making the job easier and sharing how to achieve it! :-)

    • @AliceritaE
      @AliceritaE  11 месяцев назад

      You're welcome 😊

  • @PatriciaNerydesiqueira
    @PatriciaNerydesiqueira 28 дней назад +1

    Hiii, Alicerita! whenever I use Fiji to analyze the particles in my image, I set it to exclude images that are on the edges, but it still considers them. Has the same thing happened to you? Could you help me?

    • @AliceritaE
      @AliceritaE  28 дней назад +1

      Hi Partricia,
      Yes, this has happened to me before. I will check it out tomorrow and record a new tutorial. Cheers!

    • @PatriciaNerydesiqueira
      @PatriciaNerydesiqueira 28 дней назад +1

      @@AliceritaE My dear, I don't even know how to thank you! *.*
      Fiji only considers the elements on the edges if I crop the image, but since the analysis is being done by macro, I think it's impossible.
      And cropping image by image, manually, is out of the question, since there are so many images =T
      I'm eagerly awaiting the tutorial,
      all the best

    • @AliceritaE
      @AliceritaE  26 дней назад +1

      Here is the analysis as promised ruclips.net/video/jQP-pT2qFq8/видео.html

    • @AliceritaE
      @AliceritaE  26 дней назад

      You don’t have to crop. I’ve shown you the single step you need to include in your macro to automate the analysis. The video is now online.

    • @PatriciaNerydesiqueira
      @PatriciaNerydesiqueira 25 дней назад +1

      @@AliceritaE Hi Alicerita, thank you very much for the tutorial adjust> auto crop (guess background color)
      I put it in the macro and it worked, thank goodness.
      For my images, just checking the "exclude on edges" option wasn't working. Why? I don't know.
      maybe it will work for another collection of images
      anyway, I appreciate the guidance, you always help me.
      all the best!

  • @NangHtayYin
    @NangHtayYin 6 месяцев назад

    Thanks a lot, how do i delete a frame though? i have 4 of them and i just need only 3. thanks again

    • @AliceritaE
      @AliceritaE  6 месяцев назад +1

      For that, use the regular montage. I will send you the link

    • @AliceritaE
      @AliceritaE  6 месяцев назад +1

      ruclips.net/video/fHF2gkxT2sg/видео.html

    • @NangHtayYin
      @NangHtayYin 6 месяцев назад

      Thanks a lot. please do the tutorial for image J as well @@AliceritaE

    • @AliceritaE
      @AliceritaE  6 месяцев назад

      @NangHtayYin I will do that.