Chemistry with Python - an Introduction to RDKit

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  • Опубликовано: 25 авг 2024

Комментарии • 26

  • @Stelo555
    @Stelo555 3 года назад +12

    Thank you for this nice little tutorial. I'm a chemist and just started to get more into cheminformatics ... watching your video was a great start. I would love to see more like that. :-)

  • @askhataubakirov9370
    @askhataubakirov9370 2 года назад

    Thank you for the very descriptive and useful introduction! Please keep it going - I would be happy to see more

  • @Bunnybobscodes
    @Bunnybobscodes Год назад

    I was not aware of the RDKit tooling this is really helpful!

  • @khinchang7628
    @khinchang7628 2 года назад +1

    Hi. I am learning Conputational chemistry. I hope you will post more videos related to chemistry. Thank you so much for your tutorial.

  • @user-dn9wm5ei2j
    @user-dn9wm5ei2j 7 месяцев назад

    I m from Brasil, well done machine learning

  • @scienceaddicted3431
    @scienceaddicted3431 2 года назад

    Great video! It's a topic I also intend to tackle on my channel. Thank you for your work! 👍

  • @jackq2331
    @jackq2331 2 месяца назад

    Great course.

  • @maihoa9032
    @maihoa9032 2 года назад

    I hope you will upload a lot of videos realted to Chemistry in the future. I am studying computation chemistry. I am using python

  • @70shahin
    @70shahin 2 года назад

    I totally needed that.
    thanks

  • @DrWillWood
    @DrWillWood 2 года назад +1

    Great tutorial, thank you!

  • @piergiorgiocianciullo6784
    @piergiorgiocianciullo6784 2 месяца назад

    Super! 👏🏻

  • @alice920124
    @alice920124 2 года назад +2

    HI! I appreciate your great effort in introducing a tutorial of RDKit. Would it be possible to perform quantum computational studies such as calculation of Fermi energy?

  • @debanjansen1282
    @debanjansen1282 3 года назад +2

    Haloo, I have 1milion compounds retrieved from chembl dB. I want to build 3D mol2 structures from each smales and calculate as much as descriptors calculation for ML model. How to do that with RDkit?

  • @taosun8549
    @taosun8549 3 года назад +1

    Thanks, great video. I have learned a bit Rdkit as well, but I am not sure if we could use it to analyze the reaction mechanism, like how cool it would be if we could generate an electron pushing arrow image automatically.

  • @ayaalaa6261
    @ayaalaa6261 2 года назад

    thank you!

  • @jestinpjiji260
    @jestinpjiji260 3 года назад +1

    Hey is there any function in Rdkit which can convert the smiles text into the corresponding IUPAC Name or compound name
    for eg: we know that 'C' is the smiles format of methane so is there any function to which we provide smiles as an input and provide u Methane as an output

  • @satyarahul8007
    @satyarahul8007 2 года назад

    Hello , i an excel sheet of compounds and i need to find the aromatic rings in the compound by iterating through compunds. But what is condition to find aromatic rings.

  • @hyejihwang1490
    @hyejihwang1490 3 года назад

    thank you!!!

  • @kirk0831
    @kirk0831 3 года назад

    Great. Can you do how rk do chemical enumeration?

  • @petelok9969
    @petelok9969 2 года назад

    Hi Bernard, nice tutorial. I'm getting an import error when I run 'from rdkit import chem' jupyter can see the path but just can't do it.

  • @balajeeramachandran2141
    @balajeeramachandran2141 11 месяцев назад

    great intro tutorial learning how to import from online databank but the background music is horrible. Easily getting diverted.

  • @faridehabdollahi1703
    @faridehabdollahi1703 3 года назад

    Hi,
    Thanks for your useful tutorial.
    Can you please tell me are there any methods for converting a list of molecules to their smiles code with RDKit package and how?
    Thanks

    • @aminaghamohamadi1165
      @aminaghamohamadi1165 2 года назад

      I believe you can use a pandas library and the function Chem.MolToCXSmiles from RDKit to achieve that.

  • @ramachava1293
    @ramachava1293 2 года назад

    Hello sir
    I'm a PG (organic chemistry) student. Could you please. Tell me some chemistry related IT courses.
    Thank you
    And thank you for video

  • @crimson4066
    @crimson4066 2 года назад +1

    No music necessary