i followed exactly the same steps, I saw some differences, first, after I click enter when i type in nano trim_reads.sh, it won't create additional terminal window as you did, you have two tabs in parallel, while i only have one. sec, i need to use Ctr+O instead of Ctr+S to save sh file, after the saving, it won;t to back to the original nano trim_reads.sh terminal window, i need to create a new terminal window and use chmod +x trim_reads.sh and ./trim_reads.sh, after that summary part crushed, saying A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x000000010c9d7648, pid=10860, tid=10243, what does this mean? thank you for help
I am not getting equal reads in output fastq files how to do this I'm totally confused please guide mee please i beg
i followed exactly the same steps, I saw some differences, first, after I click enter when i type in nano trim_reads.sh, it won't create additional terminal window as you did, you have two tabs in parallel, while i only have one. sec, i need to use Ctr+O instead of Ctr+S to save sh file, after the saving, it won;t to back to the original nano trim_reads.sh terminal window, i need to create a new terminal window and use chmod +x trim_reads.sh and ./trim_reads.sh, after that summary part crushed, saying A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x000000010c9d7648, pid=10860, tid=10243, what does this mean? thank you for help
Perhaps you can book a session so that we discuss more on the issue.
I don't understand why did not perform fastqc in the first place
Thanks, please provide the bash codes in free
Is it necessary to creat trimmed_unpaired?