Filogenia Molecular de Fungos: 4- Inferência Bayesiana

[@ceciliasochiarelli9489]

Bloco de comandos:
Individual:
BEGIN MRBAYES;
Lset nst=2 rates=propinv;
Prset statefreqpr=dirichlet(1,1,1,1);
MCMCP NGEN=1000000 PRINTFREQ=1000 SAMPLEFREQ=1000 NCHAINS=4 NRUNS=2 SWAPFREQ=2 FILENAME=act;
MCMC;
SUMP BURNINFRAC=0.25;
SUMT BURNINFRAC=0.25 FILENAME=act CONTYPE=HALFCOMPAT;
END;
Concatenado
BEGIN MRBAYES;
CHARSET act = 1-295;
CHARSET apmat = 296-1283;
PARTITION FAVORED =2: act,apmat;
SET PARTITION = FAVORED;
UNLINK STATEFREQ=(ALL) REVMAT=(ALL) SHAPE=(ALL) PINVAR=(ALL);
Lset applyto=(1) nst=2 rates=propinv;
Prset applyto=(1) statefreqpr=dirichlet(1,1,1,1);
Lset applyto=(2) nst=2 rates=gamma;
Prset applyto=(2) statefreqpr=dirichlet(1,1,1,1);
MCMCP NGEN=1000000 PRINTFREQ=1000 SAMPLEFREQ=1000 NCHAINS=4 NRUNS=2 SWAPFREQ=2 FILENAME=2genes;
MCMC;
SUMP BURNINFRAC=0.25;
SUMT BURNINFRAC=0.25 FILENAME=2genes CONTYPE=HALFCOMPAT;
END;