Multiple Sequence Alignment using R

bioconductor.o...
The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade.

[@Lamothe.Bioinformatics-gj6xn]

when it says 'pdflatex is not available', how do you reconcile that?

[@Bioinformatics_Made_Easy]

msa package provides a unified R/Bioconductor interface to different multiple sequence alignment algorithms. Currently, ‘ClustalW’, ‘ClustalOmega’, and ‘MUSCLE’ are supported. All algorithms are usable without additional software packages and on all major platforms.
You will find reference here www.rdocumentation.org/packages/msa/versions/1.4.3/topics/msa-package

[@winniefrimpong]

How did you get the Clustalw

[@Bioinformatics_Made_Easy]

www.rdocumentation.org/packages/msa/versions/1.4.3/topics/msa-package

[@saeedjaanz]

You can call or declare the ClustalW object/function in the code. R will tell you the rest.