Finding DNA Motifs: Information Content, MEME, and JASPAR

In this video, I will show you how to find motifs in a collection of DNA sequences. I will show you an example using DNA footprint data for the transcription factor "giant". I will show you how to find the actual binding motif within those sequences using the program MEME, and I will also show you how to read data for binding sites from the JASPAR motif database.
If you haven't already, check out my video on motifs defined by a position-specific scoring matrix: • Position-specific Scor...
meme command line options: meme-suite.org...
You can also try out a MEME web-based tool: meme-suite.org...
JASPAR database example: jaspar.genereg...