How to get the Kegg IDs for KEGG Pathway Map

In this video, we will find the IDs of our gene by using the protein sequence. These IDs will be used to construct the KEGG pathway Map.
KEGG Pathway Database
Pathway analysis of Gene, Protein & Enzyme
KEGG Map IDs
KEGG map construction
How to use eggnog mapper to get the GO IDs?
eggnog mapper to get the KEGG IDs?
eggnog mapper to get the KO IDs?
eggnog mapper to get the Ko num IDs?
eggnog mapper to get the E.C IDs?
Protein sequence in EggNog mapper to find Kegg IDs?
How to construct pathway in keg
How to show genes in Pathway
Pathway diagram
How to make Kegg pathway diagram?
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database resource that integrates genomic, chemical, and systemic functional information. In particular, gene catalogs from completely sequenced genomes are linked to higher-level systemic functions of the cell, the organism, and the ecosystem.
KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge of the molecular interaction, reaction and relation networks for: 1. Metabolism. Global/overview Carbohydrate Energy Lipid Nucleotide Amino acid Other amino Glycan.
Kegg a pathway database
Link: www.kegg.jp/ke...
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#bioinformatics
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#pathway
#kegg

[@sarikapawar2490]

Thank you. Very nicely explained !!!

[@genomewidestudy]

Glad it was helpful!

[@BonifaceNDAYAMBAZA]

Thank you, brother, for this great video. I appreciate your effort.

[@genomewidestudy]

So nice of you

[@jalilahmad9923]

Thank you sir

[@genomewidestudy]

So nice of you

[@gobindathapa9182]

How to find out expression level ? or fold change ?

[@genomewidestudy]

From RNA seq data, If you did not have the RNA seq then download from public RNA seq data

[@genomewidestudy]

Watch this cideo to download expression data from public RNA seq data
ruclips.net/video/5BQNnWada88/видео.html

[@tayyabatariq6974]

what about those plant genes that are not in kegg database. how can we find their pathway

[@genomewidestudy]

Yes, On the basis of already predicted proteins, you can. because it need the protein sequences, not the specie name. But you can give the any known plant name mentioning the pathway ID instead of your plant name while preparing the pathway. Because all plants have the same pathway.

[@tayyabatariq6974]

I want to find the pathway of plant transcription factor under abiotic stress.

[@genomewidestudy]

@@tayyabatariq6974 you can follow the steps of video 1 and video 2, then at the end take the name of any known crop

[@tayyabatariq6974]

@@genomewidestudy thanks i wish you great success. I ll share ur stuff with peers

[@genomewidestudy]

@@tayyabatariq6974 Thanks alot. need your support