How to Predict Ligand Binding Sites with AlphaFold (AF2BIND)

[@potatosalad535]

I've was looking for this video, thank you for your effort

[@Bioinformaticsinsights]

Glad I could help

[@peter_dockit]

Great! How do you calculate the grid box after getting the ligand binding residues?

[@Bioinformaticsinsights]

It depends which program you are using. I have covered docking tutorial both for online and offline setups. Please go there, if still you have question, will be easy for me to answer.

[@mokhamadfahmirizkisyaban953]

thank you so much, can you make tutorial for how to use alpha pulldown?
thank you

[@Bioinformaticsinsights]

Thanks for watching. I guess you mean AlphaFold not alpha pulldown. I have covered already, please watch below link. ruclips.net/video/iGGby6zavAY/видео.html
Best Regards

[@wizardlegend07]

Thanks Dr. I am grateful for help. pls sir, I am patiently waiting for tutorial on the questions I asked

[@Bioinformaticsinsights]

Dear you have asked for Protein Refinement, it has been covered on this link ruclips.net/video/njkrHefUxtU/видео.html.
Also you asked for protein looping. I assume you mean from modeling. Here is the link, already covered. ruclips.net/video/iGGby6zavAY/видео.html

[@abubakarraja7605]

Thank you so much 😊

[@Bioinformaticsinsights]

Always welcome

[@ES-yd1ze]

Hello Dear Doctor please I want to back to this video in future
What should I learn before starting with this video
I mean should i learn python or other thing ?
Thank you for your efforts

[@Bioinformaticsinsights]

You don't need to learn some extra things specifically for my videos. Though, learning has no harm :-)

[@israelekoro8617]

why no audio?

[@Bioinformaticsinsights]

There is audio