Bug Fables: ALL Crystal Berries, Lore Books, Discoveries

Lore Books, Discoveries are in a pinned comment below
Hope this helps!
Crystal Berries
CHAPTER ONE
1: 00:07 Outside of Snakemouth Den
2: 00:19 To the left of the water-filled room hidden in an uprootable bush
3: 00:37 Behind a giant mushroom to the left
4: 00:44 Story Progression
CHAPTER TWO
5: 00:51 Music Theatre in Ant Plaza. Keep hitting the cylinder with Kabbu
6: 01:03 First room of the golden path from the cavern. Head north behind a bunch of bushes
7: 01:16 In the windmill room available as soon as you get your first beemerang upgrade
8: 01:29 Backtrack to the golden path and use the new beemerang trick to go up
9: 01:54 To the left room as soon as you start the path to Venus.
10: 02:12 Story Progression
Chapter Three
11: 02:22 Bugaria Pier (To the right of desert entrance)
12: 02:28 Story Progression
13: 02:37 Bee hive top left room from crystal save (Crystal save spot to the right of tram room)
14: 02:43 Bee Hive Basement
15: 03:16 Story Progression
CHAPTER FOUR
16: 03:25 immediately to the right when thrown in thief's prison (talk to the tanjerin to wake it up)
17: 03:38 All the way to the right of theif's prison
KABBU'S DIG SPOTS (backtracking during chapter 4)
18: 04:04 Ant City Plaza
19: 04:13 To the right of explorer's association
20: 04:21 In the Ant Tunnel's Break Room
21: 04:38 Southern part of the Golden Settlement
22: 04:46 Aphid Farm to the left of Golden Settlement
23: 04:59 Same room, talk to fortune teller by digging behind the fence
24: 05:22 Ant ruins in desert, south of the oasis
CHAPTER 4 SAND RUINS
25: 05:56 In the crystal room where you acquire a key, take the elevators to the right while solving a small puzzle
26: 06:18 Use Leif's shield to enter secret room
Snakemouth's Den Secret Lab (optional area only available after beating Chapter 4's boss)
27: 06:32 Puzzle room
CHAPTER 5
28: 07:05 Go left as soon as you enter the grasslands from the desert
29: 07:30 dig spot from room where you enter grasslands from desert
30: 07:38 Swamp, boulder break room with platform puzzle
BACKTRACKING WITH KABBU BOULDER BREAK
31: 07:55 To the left of snakemouth den behind old man's hangout
WIZARD TOWER (available after hornet section)
32: 08:10
CHAPTER 6
33: 09:03 in the termite throne room
34: 09:19 Off the Termite Pier to the right, requires Vi's Flight
CHAPTER 6 QUESTS
35: 09:29 South of the pumpkin patch you'll come across the foggy room that sets you back if you make a wrong turn. Use the video as the guide and once you enter the next room offer the hole an item (only works once)
36: 10:45 Artia's Quest Reward
37: 11:27 Metal Island, Kabbu dig spot near resturaunt (technically available earlier if you paid the berries or did spy card tournament prior to chapter 5 starting)
38: 11:40 In need of Sweets quest reward. Triggers after fighting Riz
CHAPTER 6 BACKTRACK VI'S FLIGHT
39: 12:26 Desert, area where you first fought the thieves and has a save crystal to the bottom right. Fly over sand pit and climb the mountain
40: 12:44 Snakemouth Den, the first room. After jumping on the first mushroom spring fly to the bottom right and use the beemerang to bring it down
41: 13:10 South of the Explorer's association. Use Vi's flight to reach the hill and dig
CHAPTER 7
42: 13:29 First room of the giant's lair. Head south as soon as you enter
43: 13:40 the second floor of the fridge section tucked behind a milk carton
OTHER
Lore Books Reward: 14:10
Spy Card Tournament Reward: 14:19
Discoveries Rewards: 15:05