Single cell transcriptomics - Cell type annotation (7 of 10)

The video was recorded live during the SIB course “Single cell Transcriptomics” streamed on 06-08 March 2023.  
The course materials can be found in the dedicated GitHub page: sib-swiss.github.io/single-ce...
This video contains information on how to annotate cells captured within a single-cell RNA seq experiment and assign them to cell types. Automatic and manual annotation methods are compared, and the method used by the R package SingleR is explained. A list of databases containing marker genes is also presented.
-Target audience: PhD students, post-docs and researchers in life sciences who are doing bioinformatics analyses and want to get introduced to single cell transcriptomics data analysis.
-Speaker: Dr. Tania Wyss, SIB Swiss Institute of Bioinformatics 
Any questions about this talk? Contact: Tania Wyss, [e-mail] 
 This video is available under the creative commons license CC-BY-4.0

[@ruruyang914]

When you introduce each method, it will be great and helpful to give a comments or recommendations for each modality.