Hi Tilestat. Thank a lot for your videos. I'm trying to apply the Fisher's Exact test on RNAseq count (using EdgeR exactTest function ) but so far I can't understand how the p-value is calculated. I'm not able to apply your example on a gene count matrix (I'm feel so stupid 😭😭😭...) Can you give me some suggestion?? In any case thank a lot for all your video, I appreciate so much... thanks again
Sorry, I have never used this type of test on RNAseq data. However, I have previously used Poisson regression (or NB regression) on such data that I have a number of videos on.
Really having a great benefit from following your channel!
Great to hear that.
Very good explanation, thank you
Hi Tilestat.
Thank a lot for your videos. I'm trying to apply the Fisher's Exact test on RNAseq count (using EdgeR exactTest function ) but so far I can't understand how the p-value is calculated.
I'm not able to apply your example on a gene count matrix (I'm feel so stupid 😭😭😭...)
Can you give me some suggestion??
In any case thank a lot for all your video, I appreciate so much...
thanks again
Sorry, I have never used this type of test on RNAseq data. However, I have previously used Poisson regression (or NB regression) on such data that I have a number of videos on.
I thought that we only use FET if the expected values is less than 5 in every cell?
For a Chi-square test, the expected values should be 5 or greater in at least 80% of cells