Protein-Protein docking || PatchDock, ClusPro || Protein-Protein interactions || DNA, RNA, Peptides

[@sanjaisrao484]

Excellent video thank you very much

[@fizachaudhary7049]

excellent tutorial
keep it up
dhair sara pyer or duwaye

[@MuzzammelRehman]

Thank you

[@fizachaudhary7049]

@@MuzzammelRehman wlcom

[@MuhammadFaizan-mi9yo]

Worth watching

[@MuzzammelRehman]

Thank you also share with others

[@MuhammadFaizan-mi9yo]

will do it.

[@dr.manzoorrather-howtomast648]

Very informative tutorial

[@MuzzammelRehman]

Thank you

[@Rekhabohra19]

Nicely explained.. thank you

[@MuzzammelRehman]

Thank you

[@MuhammadFaizan-mi9yo]

Good luck sir

[@MuzzammelRehman]

Thank you

[@MuhammadFaizan-mi9yo]

@@MuzzammelRehman welcome

[@creativeuniverse7309]

Most informative video...👍

[@MuzzammelRehman]

Thank you . Also share with others to promote free education

[@abidatahseenakhtar2339]

Excellent

[@MuzzammelRehman]

Jazak Allah

[@altafkaloni0177]

اسلام علیکم جناب محترم مزمل صاحب الللہ پاک آپ کے علم میں زوق میں شوق میں برکت عطا فرمائے۔اور آ پ کو مزید کامیابی عطا فرمائے آمین دعاگو سید مزمل حسین

[@MuzzammelRehman]

Jazak Allah

[@syedrizwanshah3935]

very nice tutorial , if anyone will follow this then for surely will be cable to perform docking

[@MuzzammelRehman]

Yes definitely . If you face any problem tell me

[@31rifahnoorchowdhury19]

How am I going to
dock two protein when one of them is bound with a small compound ligand ?

[@dianaa.valencia3910]

Good video for visualizing the interacting residues. How can I calculate free binding energy for the docking? I read the 'lowest energy' in cluspro results is just a score.

[@sanabkhattak427]

sir please make a video on Haddock

[@nopainnogain.sylvere416]

please you have not shown how to dock protein-peptide, just how to upload because the peptide is not in pdb?

[@sayanchakraborty176]

Sir can you help me how to find the binding of peptide in between two protein protein interactions

[@only1kay275]

👍

[@MuzzammelRehman]

Thanks

[@sanaaharrass6239]

Great video, thanks. Do you provide online sessions? how can you be contacted?

[@sultanmahmud9498]

Sir, Is it possible to dock even after the ligand size is more than 15kb?

[@MuzzammelRehman]

@@sultanmahmud9498 you can check it to dock it manually

[@kafilakousar946]

How can we perform protein-protein or protein-miRNA docking by using autodock Vina

[@sanjaisrao484]

Hi Sir after uploading my protein protein docked complex ( obtained from clusspro) in pdbsum... I am not able to see the column of prot prot in PDBsum..Please help

[@MuzzammelRehman]

Please check your complex that it is showing two chain or ONE chain, because when you dock it in cluspro usually it give complex as one chain

[@SufyanKhan-qv4js]

Hello sir very informative video. Sir, I want to dock wild-type and mutant RBD of Omicron Spike protein with ACE 2 receptor by cluspro. How can I do that? Please kindly ASAP. Thank you! Sir, also I have a macromolecule ligand 2s albumin and a model ligand flocculating protein and want to dock it with the mutant RBD Omiron S-protein-ACE 2 complex. How can I do that?

[@dr.mohdaamir6688]

how to dock 200 peptides at the same time with a receptor protein using auto dock vina

[@margaritasantana5034]

There is only one chain in my PDBsum results, why?, we need to add pdb file of the docking solution, right?

[@mariacristinavillamedina6498]

I used the PATCHDOCK structures and I could see the protein-protein option, but not with the CLUSPRO ones

[@gauravkumar747]

Hello Sir. I tried protein-protein docking by ClusPro. But I got the results having chain A only although I uploaded separate Receptor and Ligand PDB files. Please help so that I can do the docking. As I said, only chain A is visible because ClusPro is "joining" the receptor and ligand pdb files.

[@biryani6861]

Good evening sir, sir may I have your email, I want to discuss some points about protein docking, thank you sir in advance.

[@MuzzammelRehman]

[e-mail]