Asalamu Alaikum sir, Your lectures and tutorials are amazing. i request you to make a separate tutorial on pharmacophore modeling using any online platform or any other tool which is free /trial licensed like ligandscout.
Hello professor , thank you so much for you explanation, i wanna ask you if the pdb file of the complexe generated with cb dock can be submitted to MD simulation without any problems?
How to dock if the pdb file that is only available for the protein is in complex with a ligand? Do I need to remove that ligand from the structure before inputting it to CB-DOCK? If that is how it is done, how to do it?
Thank for presentation. I just wanted to ask a problem. When iam using this docking program, it couldn't able to recognize my ligand. Can you give me suggestion? Thanks
Thank you for the information. My receptor for analysis is greater than 3 MB and the server is not uploading it. Can you please suggest how to overcome this issue?
Asalamu alium sir , want to now the best best latest chemical database to screen out the best leads? As I remember you have deliver one lecturer on it. please send me the details. than you
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Thanks a lot for making this difficult task easy for me & everyone.
Thank you
Good to see you to help the scientific community.
Thank you sir.
Asalamu Alaikum sir, Your lectures and tutorials are amazing. i request you to make a separate tutorial on pharmacophore modeling using any online platform or any other tool which is free /trial licensed like ligandscout.
Appreciate sir. kindly make the next video on the IEBD database for epitope detection and all its aspects.
This helped a lot in my thesis work. Thanks a lot. Please make a video on how to use to patchdock and firedock server.
Think you for this good presentation
So nice of you
Thank you very much sir. God bless you
Thank you
Which is the best software / tool among all the docking software.
Hello professor , thank you so much for you explanation, i wanna ask you if the pdb file of the complexe generated with cb dock can be submitted to MD simulation without any problems?
That's a very nice presentation...sir can you please suggest me how it will use as a standalone...
Thankyou so much sir. Docking seems so easy
You are most welcome
Brilliant presentation. thanks\
Thank you dear and also share with others to promote free education
How to dock if the pdb file that is only available for the protein is in complex with a ligand? Do I need to remove that ligand from the structure before inputting it to CB-DOCK? If that is how it is done, how to do it?
Plz, what is the difference between autodock and cbdock? Are they the same using?
Dear sir, how analysing the figure obtained from cd dock... Please give a supporting lecture ( video)..... Thank you
Thank for presentation. I just wanted to ask a problem. When iam using this docking program, it couldn't able to recognize my ligand. Can you give me suggestion?
Thanks
It seems like that the protein file size limit for CB-DOCK is only 3 MB. My protein is 4.5 MB. Do you know any pdb file size compressor?
fantastic
Thank you
Thank you for the information. My receptor for analysis is greater than 3 MB and the server is not uploading it. Can you please suggest how to overcome this issue?
Great content as usual. Thank you. I have a question, do you think online docking is acceptable in International journals?
Yes you can publish after validation
@@MuzzammelRehman How to do validation?
Can I dock on any protein even if it is not a receptor?
Sir how can we know which ligand should we use?
How can we assess whether the link between a protein and a ligand is strong or not?
For this you can perform Molecular Dynamics Simulation
How many ligands can be docked in cb dock?
May I know the protein for finding antianginal activity pls help sir
Can i use this cb-dock as a basis for my grid sizes in autodock vina?
Sir o ligang ka size kam chaiye Aisa bol raha hai us ligand file kon kaise Kam kre
Asalamu alium sir , want to now the best best latest chemical database to screen out the best leads? As I remember you have deliver one lecturer on it. please send me the details. than you
You can use ZINC, Chemble , MCule, NCI , Asinex etc
Hi. How can someone get RMSD per each pose?
For the CB dock, it is necessary to perform energy minimization for ligand molecules before uploading the file.
No
sir, can we use this CB docking for paper publication?
@@shamalasham102 yes
thank you sir
Jab ligand ka size bra ho ?
actually I forget that one .
Ok