Thank you for the helpful video! I got weird result when do cell type annotation using seurat method. May I know if we can apply cell2location output to cellchat? Thank you so much!
@@Collection_of_online_tutorials the output of cell2location is python so we need to convert to seurat object for cellchat which use R? Would you please explain a little bit more and provide the script in this tutorial? Thank you!
@@Collection_of_online_tutorials Hi, I found this paper benchmarking their method with other method like cell2location. pmc.ncbi.nlm.nih.gov/articles/PMC10692090/
Hi , Could you please do a video to teach Bioconductor SummarisedExperiment S4
Thank you for the helpful video! I got weird result when do cell type annotation using seurat method. May I know if we can apply cell2location output to cellchat? Thank you so much!
yes, you can
@@Collection_of_online_tutorials the output of cell2location is python so we need to convert to seurat object for cellchat which use R? Would you please explain a little bit more and provide the script in this tutorial? Thank you!
@@Collection_of_online_tutorials Hi, I found this paper benchmarking their method with other method like cell2location. pmc.ncbi.nlm.nih.gov/articles/PMC10692090/