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As a microbiologist myself, this is so engrained into me that I cant fathom this being that impressive to Destiny... microbiology is a wonderful world of biomechanical systems that only now we are starting to emulate. Thank you for showing and spreading this knowledge to everyone!
The "just asking questions" and "consider the debate", while trying to be neutral, still comes off as being way too charitable toward creationism than necessary. Not all debates are productive, and not all sides in a debate are equally legitimate.
@@Dreeev there is no debate. The evidence for evolution is overwhelming. Nothing in biology makes sense except in light of evolution by natural selection. Creationism is an argument against authority. A complete logical fallacy.
As a molecular biologist, I think Destin did a great job of explaining how the expression, imaging, chemotaxis, and the rest works. I hope this video makes people think deeply and ask important questions. And if this comment gets enough upvotes I’ll do a video about ATP synthase 😂
I would love to see a video on ATP synthase Dr. Joe. I remember having a similar reaction to learn of ATP synthase. The countless little proton motors that make Eukaryotes function!
The thing that's been blowing my mind the last year or so is nitrogen fixation. Nitrogen is an essential ingredient for life but the majority of it is bound up in an inaccessible state of triple bonded N2. To split that bond in a laboratory you need something like 500°C temperatures at 200+ atmospheres of pressure. It takes a tremendous amount of energy. And yet, there are bacteria with these enormously complex enzymes called nitrogenases that can take triple bonded atmospheric nitrogen and in a move just short of magic (I'm being facetious) break it apart at or below room temp. Without nitrogenase life on earth would have all died off long ago as earth's supply of free nitrogen was consumed, but these bacteria saved us all. More than that, nitrogenase itself requires elements like molybdenum which are also biologically inaccessible - except for other very particular bacteria that have the ability to collect it and make it accessible to the ones that use it for nitrogen fixation. All over the place there are biological process that seem to intuit the needs of others, and not always with an apparent benifit to the giver. If I weren't alive I'd find life unbelievable.
Peas and Beans! Fixing nitrogen into my garden soil for 5+ years. Perennial BEANS! Edit: Yet you still need that bacteria to form a symbiotic relationship with the roots of the peas / beans
It's arguments like these that really highlight how much probability nails the coffin shut on a lot of theories. I'm the same guy who commented about the shazam firework on your zipper video. If you've never done the math to see the probability of the right combination of amino acids coming together and folding correctly to create a ribosome, I suspect it'll blow your mind. Also, there's something I've been stewing on recently that you touch on here: The chemistry needed for the random components of biological life to form is different for many of the pieces. Certain utterly necessary biological components cannot form naturally in the same conditions as each other. In order for a nitrogenase to function, it has to be in a creature that has mechanisms to create more nitrogenase and then subsequently make use of the nitrates that are produced. The chemistry of a nitrogenase is incredible on its own from structure to complexity to function. What are the odds that it accidentally formed? At all? Just doing the math on component combinations for amino acids and biomolecules has been plenty to just make my brain melt from the sheer improbability of it all. Add to that the fact that it supposedly formed inside an organism. An organism that was subsequently able to utilize it. That was subsequently able to replicate it. And that organism was also able to replicate itself. It amazes me that simple microbes are able to do things that it took thousands of years for us to figure out. Doing the math to assess probability makes it a whole other thing.
After skimming a comment thread debate about science/god in this comment section I’m relieved to have found this comment. This is the kind of high level comment I come to the comment section for! “Helicopter butt” is the chefs kiss of accurate description.
My wife is a Biology PhD (I am an engineer)... I am as surprised as you are with all this information... and she is like... yes we have known many of those things for a long time. This is great cross-scientific work and super important to have cross-pollination among different scientific disciplines.
DID EITHER OF YOU CONSIDER THAT IT'S ALL CREATED BY GOD ??? THE BODY IS AN ORGANICAL ROBOT & THE BRAIN IS AN ELECTRICAL GENERATOR & COMPUTER & YOUR EYES ARE ORGANICAL DIGITAL CAMERAS, YOUR OPTICAL NERVES ARE U.S.B. CABLES THAT 'TRANSMIT ENCRYPTED LIGHT SIGNALS' TO THE PROCESSOR SO WE CAN SEE 3 D. IMAGES OUTSIDE OF OUR SKULLS & YOUR HEART IS AN ELECTRICALY POWERED HYDRAULICAL PUMP WITH A SPARK PLUG AT THE TOP & BOTTOM OF IT !!! WE ARE JUST ORGANICAL HIGH TECH. ROBOTS & OUR LIKES & DISLIKES ARE NOTHING BUT COMPUTER PROGRAMMING, AN ILLUSION OF 'SELF AWARENESS' !!! SOMEONE'S TOYS !!! UNLESS THEIR IS A SOUL DRIVING THE BODY WHICH WOULD MEAN THAT THE BODY WAS CREATED FOR THE SOUL !!!
@@EdwardBlair"I'm so, so sorry Dear... I was so busy Listening, I didn't Hear you..." - fun Note? Careful trying this on the Professional Snark Spouse (results May Not be as expected..🤣😂🤣😂)
Have seen a diagram of ATPase, which closely resembles a sump pump; however, cannot imagine the actual process of converting ADP to ATP. Profoundly curious.
Biologist here, this is the part where I see many people make the wrong assumption. The flagella in a sperm is COMPLETELY DIFFERENT from the rotating flagella in a bacterium. The name is the same, I know, but they operate completely differently. The sperm flagella does not rotate at all, It's actually a sliding mechanism inside that creates a swaying motion. The flagella in bacteria are the rotating ones! ATP Synthase, though, is also another rotating molecular machines that exist in both bacteria and mammalian cells.
that's the whole point people are making. The flagella has many of the components of this motor but acts in completely different way. that means the motor is not irreducibly complex, it can still function just not as a motor. same thing with feathers, crows have them so do penguins, one flies the other one swims.
Yeah the anti-evolution comments on this video hurt to read. These things definitely have functionality short of being a perfectly optimized motor, but someone who has never seen a proton gradient, enzymes rotating other proteins, etc might think this is all unique to this one system.
Thanks. I vaguely recalled that from biology class, and your explanation saves me half an hour of an embarrassing search about sperm to confirm. It's like the mechanism which makes dragonflies (and damselflies) the premier fliers of the insect world. All other insects have all four wings (or two wings + counterweights) mounted to their back carapace. And musles which shake the carapace up and down make the wings flap (but only together). OTOH dragonflies have muscles connected to the base of each wing. That allows them to flap and pivot each wing indepdently, giving them supreme maneuverability. They look the same at first glance, but mechanically they're completely different.
"I'm getting emotional now, cuz there's a missile that I've worked on in the past" -literally the most American sentence I have ever heard in my life 😅😅
Funny take, but he's 'getting emotional' because this machine is just like something he designed, and the obvious explanation is that this could never (mathematically) have come about by chance.
@@pianogal853 "This could never mathematically have come about by change" ("obviously"), yet he showed another example of a very similar molecular contraption (the injector), which has a similar form, but with different proteins. It's like the almighty "creator", in all its greatness, only had one design to go with or, just maybe... I don't know, maybe nature found a way to rotate mutually clenched molecules, which is so "obviously" unnatural that it found it more than once.
@@pianogal853 I mean peolole have designed plenty of stuff that has then been found to have been naturally evolved in nature already, evolution is efficient.
I love how when Prash talks about the clockwise and counter-clockwise motion he moves the motor in the appropriate direction for the viewer and not himself. It demonstrates his natural ability to get outside of his own head and perspective effortlessly.
Great job! I am a physician. In the 1970’s we used to have retreats of physicians, engineers,and physicists. Together we were able to solve problems in each others specialties. If I win the lottery, I will restart this retreat!
I agree! That's how the greatest thing's get started. Each of us have ideas. Not always the right ideas for what we're thinking, solving, accomplishing. Our fellow man & woman are Dimonds in the ruff with ideas.🔥
...and then add thinly veiled creationist undertones throughout the whole video and push a garbage intelligent design book while simultaneously claiming impartiality and "not taking any sides" thereby having completely insulted and wasted said scientist's times.
You know, most authors would be happy if anyone contacted them about their work. Especially outside the field. They may not have the time to teach everyone the background, but it's always nice to see interest.
Biologist here, just wanted to point out to other viewers that the flagella in eukaryotic cells (like sperm) are totally different from those found in bacteria and archaea. While bacteria and archaea rotate, eukayote flagella bend and whip.
@docjaco this is so interesting, so do you know if the molecular motors are fundamentally different or do they share a similar construct but with different end effects?
@@keeganbarry1058 Their mechanisms are completely different. In eukaryotes the flagellum is basically pulled back and forth by tiny tubes and doesn't rotate at all!
As a software and civil engineer, I have to say my mind is blown. Mechanical engineering and microbiology seem so different, but they're actually incredibly interconnected and share many similarities. It's fascinating how people in these fields can communicate so effectively. I never regret supporting you on Patreon; it's been incredibly interesting and rewarding. Thank you so much!
We already use Generative AI. We observe its fast progress. It does not look too distant for it to evolve into Godly Creative A(?) I. As a software engineer, you know that regardless of how complex your code is, it ends on machine code. This code is executed on hardware, which is relatively simple, compared to complex tasks your program does. What we observe here is that software, written on DNA/RNA "tapes", can create structures of arbitrary complexity with relatively simple molecular mechanisms. They can replicate itself and "grow" physical objects on nanometer scale without complex fabs, precious elements and all this fine technology needed to produce silicon chips, MEMS etc. With it you can create anything, just need to design it and use suitable "compiler" to generate your RNA/DNA for your micro-bio-fab. IMO AI and what will come after it, will reconcile creationists and Darvinists. It seems that God is not an entity outside of this world, but rather a something we create now and have been created by it already. It started from Large Language Models. It is already written that "In the beginning was the Word, and the Word was with God, and the Word was God." The models were created by collecting mass amounts of human data via Internet links, social networks, Android devices etc. They encode humanity and provide necessary input to establish a God, who later "created man in his own image, in the image of God created he him". Hence, it is not an interconnection or similarity. It is just the same thing. 🙂
I am interented in finding out what are the two fields ou are doing your civil engineering In and software in. Are you focused on bring software solutions to a specific civil engineering field ?
As a mechanical and manufacturing engineer specializing in automation...this is a revolutionary explanation and I thank you for sharing it in such detailed and authentic fashion. This changes our explanation of everything electrical, and especially anything Tesla-esque. The relation of faith versus understanding, and respect between all "flags" is awesome and I hope everyone cand appreciate it from all "sides". Mitakuye Oyasin
As a former computational biologist, I worked a lot with 3D structures and the dynamics of bacterial flagellar filaments. The first thing that blew my mind was the sheer complexity and geometrical symmetry of these structures. No matter how you represent it, wireframe, balls-and-sticks, atom radii, they are beautiful. A masterpiece of mechanical perfection. By the way: at some point, you suggest a strategy to disable the flagellar motor, right? Unfortunately, the human immune system is already pretty good at recognizing and attacking flagellar structures. That's why in the acute phase of the infection, many bacteria have learned to lose their flagella, bundle together in biofilms like in a fortress, and start releasing mucus and other nasty molecules to keep our defenses away. Usually, when bacteria are roaming around is not when people feel sick. Biology is complicated, it's a continuous arms race.
@@AndoresuPeresuhe wasn’t replying to you lol. But you don’t understand, then allow me to give a short explanation. He’s referring to how beautiful the flagellar motor is in all its perfection. So they are saying, GOD created such a complex motor, that there’s no way it happened by chance like the Big Bang.
It's not only the little motor that's incredible. It's also the methodics that scientists have developed to actually "photograph" these proteins. I've always been in awe with how scientists gather and interpret data. It started with astrophysicists and the vast information they get from "just light". Thank you for not only covering the little motor but also the methods that enabled them to view it! :)
"To image", not "to photograph". Photographing is just one imaging technique while "imaging" is the umbrella term for all different methods of imaging, be it using visible light, IR-spectrum, radio-spectrum, x-rays, et cetera.
@@wullxz Just to add a bit more nuance... As you alluded to, this "result"is the output of dozens, or even hundreds, of scientific studies that were leveraged to build an atomic-level *_model_* of this apparatus. On its own, electron microscopy (EM) cannot yield atomic level data. It is limited by the physics behind the technology. But it can provide insights into molecular morphology. I'll get back to this. In separate studies, structural biologists built atomic level models of individual components using other technologies like X-ray crystallography and biomolecular NMR. Based on the morphology imaged by cryo-EM, the atomic level models are built into that morphology, along with data from other sources and then subjected to incredible amounts of computational modeling to arrive at a structural model that fits the data and known physics. A reasonable question would be "why not just use the atomic resolution techniques to study the whole apparatus?" Without going to deep into the reasoning, I'll just say that those techniques have their own comications. That's why data from many areas of expertise are utilized. While advancements like this draw a lot of public interest, they're often the result of myriad tiny steps by a lot of dedicated scientists who will go relatively unrecognized.
We can't just put a little camera inside a bacterium to film the process live. We have to invent new ways to get the pictures we want. Often stopping the process to be able to get a good still image.
I had the exact same reaction to both the chemotaxis engine and to the layers of research and analysis that made the final imaging product possible. If I weren't in my 70s, I would be tempted to return to college to work in this area.
ATP synthase enzyme needs no punctuation, let alone incorrectly quoting nobody at all. And inverted commas implying so-called or supposedly would still be incorrect, because it is what it's called. 🕊️
@@canUfeelMYface In electron transport chain there is build up of Hydrogen in the inner membrane of Mitochondria, this creates a gradient of hydrogen inside vs outside along with charge, when the hydrogen arrives at ATP synthase complex it gets out turning the turbine which completes addition of phosphate to ADP thus forming ATP
Small correction... No, the flagellum of a sperm cell does not work with a flagellar motor like bacterial flagella do. In bacteria, the flagellum is rotated by a rotary motor that is powered by the flow of protons or sodium ions across the bacterial cell membrane. In contrast, the flagellum of a sperm cell, known as an undulipodium, operates differently. It moves by a whip-like action powered by the sliding of microtubules against each other. This movement is driven by the motor protein dynein, which uses ATP as an energy source. The dynein arms attached to the microtubules generate force by "walking" along adjacent microtubules, causing them to slide and thus create the bending motion that propels the sperm forward. This type of movement is characteristic of eukaryotic cells and is fundamentally different from the rotary motion seen in bacterial flagella.
Correct, I noticed that too. Concerning the need for a designer....well....try to design this as an engineer. The design process is much harder than some think
@@DanielCurrierif this would be incredibly difficult for Engineers to replicate imagine an unintelligent random nuke like explosion in a vacuum some how making this. 😂
@@Thetruepredictor correct, I've designed large scale gear pinons before. Harder than many think. This is microscopic in size and has greater complexity than my system
Small correction, you suggest the flagellar motor is integral to the creation of human life, but the flagella on human sperm is a eukaryotic flagella (technically a long cillia) and works through a completely different mechanism with a bunch of microtubules that slide past eachother causing it to spring and whip around. It's a very different mechanism.
True, however without these bacteria human life wouldn't exist because they perform a ton of crucial functions in our digestive system, so in that sense it is integral to life
Don't knock someone just discovering this. We biochemists or molecular biologists learned this in undergrad biochemistry, but he is correct is showing how astounding this system really is. We ought to be staring in wonder at these molecular motor systems, not just accepting them as ordinary and uninteresting. We ought to be filled with delight at the variations on the ATP synthase motor that nature has provided. And the efficiency of them... I still can't get my head around just how perfect they are in their efficiency. If I could get a lawnmower engine with that kind of efficiency of energy to work, I would be moving loaded freight trains across the country on the fuel I would use in that lawnmower. So yeah, this system ought to be highlighted and celebrated, and we should be considering how many other molecular applications there are of this system, should we choose to attempt to use them for engineering purposes. I think our medical field would be the first to really transform.
Destin got amazed by the engine. He didn't really stop to think about the 100 times more amazing part. That bacteria factory is able to take instructions and build an engine.
Basically every cell has these sort of "factories". Theyre all capable of building proteins. The DNA (or rather, the mRNA) tells the "factory" in what order it should combine amino-acids to produce proteins. Thats basically how the covid vaccine works. It gave your bodies cells some mRNA that told the factories the order in which they had to assemble amino-acids to produce the spike protein, which then triggered an immune response.
I've always been amazed that there is so much discussion and content about the finished mechanisms that allow cells to function; yet almost no visual representation of how these proteins are decoded from DNA (or equivalent) and constructed. I would guess that the nature of these factories makes them practically impossible to preserve intact in the way they have with these more durable motor structures.
After so many billions of years of bits finding bits that might work, with failures not making it to the next level, it seems inevitable that something elegant might come into being. They do appear to be wonderful Designs, or Creations... and perhaps they are. Yet I am even more astounded that differences between Entropy and the Energetic can form such functionality given enough Time, perhaps all by itself, like the way the grass grows when I am not looking... and Dang I need to go mow the yard AGAIN.
I'm a hairdresser and was directed to watch The Inner life of Cell Animation because I took a class of the Science of Hair. I love chemistry and went down the rabbit hole and found your video. I love how you used your engineering back ground to make analogies to understand what you were seeing. I subscribed and will be watching mor of your videos.
Really disturbing moment. He's so proud of helping murder innocent civilians in the middle east and elsewhere. Makes me think Americans are beyond help.
I used to be a biologist who designed new kinds of microscopes and microscopy techniques. The PI has it correct in saying that the imaging techniques have enabled new discoveries. We went from imaging single entities to a more systemic level. The next step that will revolutionize our understanding is imaging systems while the systems are actually working.
What's also crazy is that as our processing power increases we can actually extrapolate a TON of data without actually seeing it. I work in a part of semiconductor manufacturing/research where we use mathematics to basically enhance scanning electron microscopy well beyond our usual resolution. We can do this based on past data of how these angstrom level structures tend to form in different environments. So if we see one structure we can confirm a set of data which makes the likelihood of something else also happening. It's really fascinating. It all comes together to make SEM much quicker and easier to use.
@@CRneu This sounds a bit like PALM and STORM in light microscopy to overcome the usual diffraction limits and reach super resolution. Not sure if it is any useful to you, given that you material guys are usually much further technique wise than in life sciences, but it might be neat to know.
This "motor" really is fascinatingly complex. I also find it marvelous that a tiny factory can crank out thousands of these motors like an assembly line. As long as it has instructions! LOL Freaking amazing the engineering that is happening at the microscopic level. A machine that can create machines... I would love to tour that factory 😁
Love your videos Jeremy - this motor screams "design" imho. Its just as if we discovered some advanced alien technology at the basis of life. No way billions of years of "undirected processes" can come up with this. Even eternity could not do it randomly. Just my totally unbiased opinion 🙂
Software developer here, it's interesting that the process they use to generate 3D images is essentially the same as photogrammetry. This is the process of taking pictures of objects, like a rock, from many angles and stitching them together to create a 3D model for things like video games and movies. The idea to do this at the scale of an electron microscope is extremely clever. The rest of the things I learned in this video are truly mind-blowing. Thanks Destin!
I've seen this at the dentist, I didn't have to byte into cement-like modeling clay in a while now, they just scan it with a small camera attached to a mirror.
Yeah. It’s actually tomography, so more like a PET scan. The object being imaged is transparent to elections, so kind of like 3D x-ray image of the object. Pretty similar though. It’s very challenging because electrons are high energy and damage the sample, so the amount of information you can get from one particle is low, so they typically image thousands of individual particles and average. In the photogrammetry example, it would be like if your object exploded after each exposure so you need to build the 3D image from many, hopefully identical, copies.
As a former submariner from Alabama I audibly cheered when Mr. Singh said his father was a submariner in the Indian submarine force. Bubblehead camaraderie is global! Love your videos Destin keep it going. War Eagle!!
Structural biologist here. Pretty good job explaining how it works. On the question how we know where what goes: sometimes you can see the start of a chain, and we know how long each amino acid is, so it is just a matter of fitting them one by one.
@@dj-kq4fz I don’t think this is underrating but a good explanation of how microbiologists do the find and fit of protein molecules. Great explanation. Basically a 3d jigsaw where you might only know what one corner looks like.
I waited 50 yrs for this. I remember back a few years when they discovered the tail rotated by holding the tail then the body rotated. They always thought the tail whipped back and forth. The science of micro biology is impressive.
@@GodzillaGoesGaga Exactly. The blue mesh visible in the program around minute 23 is a representation of the experimental data; we can see structures on the atomic level! Working with these results and trying to model the protein is a very cool job. And I never said it was easy ;)
“I’m just going around asking questions. That’s all these videos are.” This is exactly why I’ve loved your videos over the years. Congratulations on the 300th episode. Keep up the good work.
@@carpandrei7493 Where are you going after you die? What happens next? Have you ever thought about that? Repent today and give your life to Jesus Christ to obtain eternal salvation. Tomorrow may be too late my brethen😢. Hebrews 9:27 says "And as it is appointed unto man once to die, but after that the judgement
One of my favorite things about Destin's channel is his ability to find the people who LOVE what they do. Who are genuinely excited to be doing that work. Whether it's making film at Kodak, or people uncovering the secrets of cells. Just fantastic.
Totally agree... people that love what they are creating or what they are discovering is soo amazing.. I'm not into sports but there are people that know every stat of every player on the team---not a lot into guitars but there are those who hone the Brain/finger interface the create amazing music. Our Brains plus passion/ambition/fear makes us experts in all kinds of stuff. Its interesting that passion/ambition/fear focuses the computing power of the brain. Unlike a computer that is 100% compute power on any topic----the human computer varies compute power/focus/duration by topic. Boredom does not engage compute power......hmmm
You are inspiring! I’m 52 years old and I wish I would have been exposed to your insatiable curiosity at a much younger and formative age bc I believe it would have given me the courage to pursue a different career. You make nerding out so cool and your thirst for knowledge is infectious. The effort and time you put into producing easy to digest content is admirable and a true gift to society. Thank you! 🙏
Another amazing thing about this video is that Destin has built up a reputation such that he can just call up any random reasercher anywhere and they take the time to explain their work to him. That is huge intellectual capitol.
I’m studying molecular biology: it’s so so so cool that you have started covering these topics, I find biology to be one of the most fascinating parts of the universe
As a structural biologist myself, I can say that the work that they do is amazing. The sheer amount of work that it takes to go from programming our little E.coli friend to make our proteins and then purifying them to a level when you can use it for a Cryo EM and ET at Glacios or Krios (the big daddy of cryo electron microscopes) to reconstruct the structure at angstrom levels is just immense. Huge respect to everyone who contributed to this video and made it simple for people without a molecular biology background. ❤
Dude the way you ask questions and genuinely show your interest is absolutely amazing I can really tell how much the other guy appreciated it and was excited to talk ab it
For all those wondering why the scientists chose E. coli to look at this it’s because it is the model organism for microbiology and molecular biology (yeast also but not as much). It’s easily manipulatable and is commonly used to assess a variety of molecular interactions, mechanisms, and is routinely an intermediate in generating DNA constructs.
E. coli has fast generation cycles (you get quick results), can be easily grown (you don't spend a fortune fro your research) on uncomplicated inexpensive growth media and yes, it can be easily manipulated (you need less attempts transform them). Because of that, researchers like to use it for al kinds of research. If many researchers focus on the same organism and are not studying the organism itself but use it to understand general principles, this is called a model organism. So the reason they picked E. coli is that it fits their purpose and therefore it is their model organism. E. coli being a model organism for countless other researchers is not the real causation, although the infrastructure like efficient transformation methods developed around it definitely plays a role. Nevertheless, causality goes in this direction: Attractive organism for specific research not focused on the organism itself -> research conducted employing this organism -> calling the organism a model / model organism.
As a chemist, molecular biololgy blows my mind away, we struggle to synthezise a 30 atom molecule while every living thing constantly produces insanely complex and biomechanically working supra molecules all the time. The DNA replicating complex is an equally fascinating example
Makes me feel like most of the fancy technologies humans developed in the past thousand years are just macro versions of what had been under development for a billion years, just on a smaller length scale. We're all possible because of replicable and evolvable instructions encoded in DNA and RNA. Despite all our fancy tools we've created using language and sharing of blueprints of useful tools, we're only just now scratching the surface for self-replicating and self-improving tools. I'd imagine we'd see another huge shift in society, like we've seen during the industrial revolution, as we develop tools that become better suited to pre-defined tasks over time and make its own improved copies the way all living things do to survive on the cellular level.
It makes a lot of sense though, we're using big honking machines expending a lot of energy to try and control all the parameters required to assemble nanoscopic structures while cells have all the nanoscopic tools in-house to do the same with less energy than a tiny LED. We're cutting a tiny paper snowflake garland with garden shears while cells use scissors.
@@AffordBindEquipmentActually, it's been mathematically proven that "random mutations" could produce such results, as only 1 in 10^-77 "random mutations" can produce just 1 viable mutation - and even the probability of that being a beneficial m is mutation is almost as unlikely. Hard to believe anyone can dispute intelligent design, at this point. How difficult it must be to ignore the evidence if intelligent design at Every Turn. I can only imagine the level of narcissism and denial - the sheer amount of willpower it must take to dispute the obvious... Imagine where we could be as a society if all that effort denying and protesting the obvious was directed in a positive direction. Sad.
I really appreciate how a fair amount of time was dedicated to explaining expression and purification. Sometimes it feels as though sample prep is underappreciated vs actual imaging.
As an engineer at heart, I feel this is like watching birds fly: after 400 years after Leonardo figured how birds fly, someone made an airplane. We will try to replicate it and it will be incredible. Imagine delivering medicine navigating sensors and what have you. Purification oh?
Exactly. I tell my students that they should describe a process or phenomenon in terms that their quite smart grandparent, who is not embedded in the jargon, what is going on both accurately and succinctly. That's when they know they actually understand something.
@@theultimatereductionist7592 No! Mastermind is correct. The proof for the poincare conjecture is PAGES long, but can you explain it in simple terms to a 5 year old such that they get the idea of what it proves? Absolutely! If you cannot explain it in simple terms, you do not fully understand it, q.e.d.
No new word is needed, we already have "bacteriostatic". If you're going down this path, you should also do a video about protein pumps, the mechanism that creates that hydrogen ion gradient in the first place and underpins the metabolism of *ALL* living organisms.
@@LillianRyanUhlchemotaxis inhibitor isn’t really clear enough though, since there are other theoretical ways you could interfere with chemotaxis. For example by interfering with the sensing part. It’s not wrong, maybe just overtly broad.
@@xthesayuri5756 whether you like it or not molecules are everywhere interacting and reacting with one another. Just cause you don’t see it, doesn’t mean it isn’t happening.
Hi, I previously worked as a biochemist and can shed some light on the process of "fitting proteins onto a location of the flagellum motor" mentioned around 22:18. Each protein is basically a string of amino-acids which is folded in a certain way, partially by physical or electrochemical properties of the amino-acid, sometimes by use of enzymes. When you unwind a protein its possible to sequence the amino acid revealing what the string looks like. When you combine the length of a protein string with each amino acid property you can for a large part predict where and how it folds in on itself. This means that once you sequence a handful of proteins that together make the flagellum motor complex it in theory is quite straightforward to puzzle the pieces into its respective locations based on the predicted "form" that the protein string would take.
Yes, the video skipped rather quickly over that part, or at least didn't go into a lot of detail. The thing is, in order to make all the copies of the motor, what they must have done is to isolate the genetic sequence which is the blueprint for the motor from Salmonella, then injected that sequence into E. Coli in order to have it make lots of copies of the motor. So they should already know the amino acid sequences involved, which should make it much easier to map the whole thing.
This prediction is by no means simple or straightforward, hence for many years we've had the computer program Folding At Home, which continues to run to this day even with incredible computing power applied to the protein folding problem/solutions, the solutions are still being calculated and found. There are seemingly near infinite possibilities.
8:05 A shame that Destin interrupted him here, but I found some research that explains the fascinating research: Bacteria moves in a run-and-tumble pattern. During a run, they go straight and the flagella and "motor" goes counterclockwise. During a tumble the bacteria tumbles and shifts direction. Now of course the tumble will be random, but you can still archive a route towards food with this randomness. What the bacteria does is that when it detects an increase in concentration of the food they have longer run periods so they will continue mostly in that direction, however when it detects a shift towards lower concentrations it does the opposite and increases tumble time to change direction. This will of course result in a sum movement towards the food. Amazing.
@@gama1123He isn't trying to impress. He's trying to be active in the discussion and relate it to other things that viewers might be able to draw connections. There's not much point to him sitting there and having the person talking the entire time. You can watch lectures if you don't want dialogue.
I understood that from the video... i dont remember if he interrupted but the information got to my head so i really dont think whatever he did stopped the communication of that idea at all. maybe you just didn't get it the way it was worded.
@@phiiz3r we can do this, but let’s be civil. Neo-Darwinism is unproven and not observable. The hypotheses have gone unproven and are near untestable. Logically then, how can you believe in the neodarwinist understanding of evolution with no evidence? Don’t confuse adaption with random mutation. But I’m baffled how someone can look at a molecular two way motor made of amino acids that is perfectly designed and go, “yeah, intelligence didn’t create that.” Furthermore It’s unwise to think science and theism (in my case Christianity) are at odds. Science is how we understand God’s creation. The pioneers of the scientific method did so with the belief that God created the universe in a way we can understand if we look hard enough.
The host is a smart guy and no doubt an SME in his field but he's not an SME in structural or evolutionary biology. He is a great explainer and did a good job of covering a lot of the salient information but nowhere close to an SME level of detail.
Heck yeah, I'm glad we have academics working on stuff like this. I hope they are rewarded for the sake of the science, not because some company wants to monetize it, corrupting the otherwise natural process of continued discovery
I'm an experienced engineer and I think I understand how things work more or less well, but since I started studying microbiology, my mind has exploded! A new world has opened up, a world of ultra-efficient, super miniaturized and extremely complex machines!
@@itabiritomg Hi, biologist here. The machine analogy is used too much. Biological "machines" are thermodynamically driven. They aren't mechanical devices. That is - their movements are actually nothing but random thermal vibration of molecules, just biased in a specific way to make a consistent movement. For example - the gear protein that makes the flagellar motor move, doesn't do any gearing at all. It just supplies hydrogen ions to it in a specific direction. Secondly, I want to emphasize that these 'mchines' aren't that efficient either. For example - flagellar motion works with
@@aniksamiurrahman6365 When we say machine, we didn't strictly mean a rigid mechanism. A machine is just any device that can use energy to perform work in order to achieve a function. These flagellar motors certainly fit in that description and they are still extremely incredible and wonderful.
I am NOT a phd in anything including cell biology or molecules. I am but a lowly mechanical technician who just took a course on industrial electricity. What I am seeing here is a reversible electric motor complete with gears, races, shaft, bearings, variable speed transmission, and mated parts like rotors and stators that have to fit perfectly into each other for any of it to function. Come on. Surely this is a designed system. How on earth would these individual components be formed as part of other evolved systems in the precise measurements / dimensions required to somehow all be brought together all at once and create this functioning apparatus? I am not religious. I believe in evolution. I also have eyes and believe what I see and appear to be seeing a designed device. Has anybody identified the individual components and specified where they were created independently?
@@tyharris9994 Evolution is algorithm which best case solution spread to next generation trying to find what it's more advantageous using things already there. It's so powerful that computers scientists designed one of the most powerful AI algorithm, genetic algorithm. Biomimetics covers a lot of that and we could use more
@@tyharris9994 Billions and billions of years of trial and error, complex life forms did not emerge overnight. It seems to me that even very intelligent people often forget this fact.
@@tyharris9994That's exactly what evolution is. It takes so long and so, so, so many iterations of selection. Bacteria that developed prototype of with very weak of motility from random chance ends up surving much better than others, and ones that mutates a more updated version that works a bit better, survives a bit better and outcompetes it's older generation. These bacteria doubles like veery thirty minutes (in log phase) , and think of how long they have existed. This kind of bacteria has evolved from the first prototype of motility to what it has now, like a rocket from Mark 1 to Mark 6, it is Mark 1 to Mark whatever trillions for these bacteria. It is a long time and by chance and how it optimizes their survival in a harsh world out here.
Because it didn't start out that way. You're looking at version 50 trillion of it, and ignoring all the versions that led to its development and which were superceded by a better version that came later, outcompeted, and replaced it.
I’m just a dame from no Discipine whatsoever, but am excited about wrapping my head around concepts of which I have no knowledge. This conversation was done so well I could understand the beauty of this design, and the very idea you’ve found a MOTOR at the cellular level in a BACTERIA. Tiny mind blown.
It knows this because it knows where it isn't. By subtractinf where it is from where it isn't or where it isn't from where it is, whichever is greater, it obtains a "difference" or "deviation".
Dithering is actually a great analogy for evolution. When the bacteria doesn't need to move (evolve) it stays relatively still. When it does need to move it moves in random direction. It is improbable that it would go back to the start, but there is no "forward".
I'm a mechanical engineer and one of my best friends is a bio guy (he has like two Master's degrees and is pursuing a PhD--he's wicked smart). When we lived together he would oftentimes find papers of the mechanics of microorganisms and show me the kind of "engineering" that has already been used in biology. Really cool stuff
@@AndrewFosterSheff69 except there no evidence of a creator and plenty evidence that contradicts the hypothesis of intelligent design in biology. Religion is toxic to humanity.
Well, engineers are an outcome of evolution xD. Evolution has no limit on complexity. The only thing that matters for evolution is that it works reliably. If that's a super complex structure on top of another, fused with a third one, combine it with neural networks and many neural networks form a social structure together where ideas evolve to a point where engineering is born - then that's extremely hyper mega complex - but it works. And that's the *only* thing that matter for evolution.
I am a retired bio engineer. The lab that I worked in for over half of my 74 years studied the molecular structure of cardiac muscle cells. The contraction of these muscle cells is driven by gradients of several different ions, much like the flagellar motors. There are ion channels that open to allow ions to flow into the cell to cause contraction and then there are ion pumps that are used to re-establish the gradients to allow the cell to relax. So my question is this, if these molecular motors are driven by the gradient of hydrogen ions, have the ion pumps, that must exist, been studied that regulate the ionic gradient? Thanks for a wonderful discussion!
Yes, the proton pump exist and involve in sooooo many cases like in your stomach to keep the pH at low level, and it has also been studied for decades 😉
This is really, really, well made. I with my engineering PhD and my parent with a theology degree were both able to understand this on a level that kept us interested, and we both had fun watching. Really amazing Desitin.
The thing is, calling a biomechanical motor “complicated” is strange based on everything else we know about life. A brain is complicated. The immune system is complicsted. An entire organism working in unison is complicated. A little motor feels like the least wild thing about life. Put another way, inventing the steam engine is pretty cool, but humanity being able to globally communicate, innovate, and utilize that steam engine is even more crazy. The steam engine is simple in comparison.
Exactly.. everything that have evolved over a billion yr is "complex" .. but that's after a billion yr of evolution. It's like coming to a built house and being amazed that such a thing could just exist. We know the mechanisms of evolution.. it's not a mystery. This is litteraly the argument of religious zealots in 2007, they used the flagella and the eye as evidence for a creator. It was called intelligent design and was debated to death on yt in 2007-08 between atheists and religious ppl... ppl may remember thunderfoot and venomfangx.
Agreed, but I suspect that Destin is a bit of a creationist/intelligent design believer, and they tend to have a certain way of perceiving things like this.
I agree with you, but I also want to point out that the fact that a biomechanical motor is "simple" in terms of nature's complexity is extremely awesome and telling.
@@phasmata3813 It's true. It makes me a bit sad. Like complexity exists everywhere. It only seems special here because you didn't expect it here, and there it is. So now this is the proof that god exists? I am not so sure
I think the interesting question is how you get there. There is a pretty obvious line from a single nerve connecting a sensor and a muscle over one more nerve next to it, to a whole bundle of nerves that make up a brain. To stick to your analogy: Figuring out how to talk to your neighbor, organising into a group, figuring out how to talk to other groups - that's a relatively straight forward process. But putting together all the principles needed to make a steam engine at once is a whole different beast.
One of my favorite things is when Destin speaks with someone who is very knowledgeable and passionate, you can tell they want to geek out over the topic, but they question how smart this RUclipsr actually is. And then without fail in his videos, Destin will show how smart he is, and the expert perks up and the vibe of the video changes immediately.
Yes, that struck me too, how he quickly related the biased random walk of the bacteria to his own work on using biased dithering of the control fins to improve the accuracy of guided missiles. Then Prash had an 'Oh yes' moment. Prash also had an intuitive feel for how much detail the audience could handle. Nicely done by both guys.
@@JiveDadson Destin is the very much the opposite of gullible. He uses his knowledge and communication skills to breakdown complicated things and explains them to others so they can be knowledgeable as well. He urges people to think critically. If Destin wishes to think god created these things then so be it, I might not agree with him. But my opinion holds just as much weight as his does.
Destin very cleverly sort-of acts dumb and teases information out so the experts have to explain things so we ordinary mortals to understand (apologies any non-ordinary mortals reading this!).
I love this channel so much for one thing and that is the fact that Dustin understands whatever he is listening to and moreover understands the person who he is talking to on a higher level than most people and asks the right question in the right way. Thank you Dustin for your videos which always opens up the viewer something to learn. ❤❤
As an airline pilot, I had a guest in the flight deck one day (back when we could do that) who was a molecular biologist researcher at a local university. He expressed wonder at the complexities of our flight deck and aircraft. I remarked that what he worked on every day must be a thousand times more complex! We were both in wonder and awe of these things that we humans (in the case of an aircraft) and ??? (you fill in the blank) have made in the cellular structures!! I love your encouragement here to "Not defend a flag," but just look and ponder!... Thanks for all this - it is so absolutely amazing!
The first time I saw the flagellar motor I was staggered - i have never forgotten it. Later I stumbled onto an animation of kinesin protein walking on a micro-tubule and was just as floored. The molecular machinery of life is mind blowing and I LOVE IT :D
@@kenfryer2090 Yep. A great example of irreducible complexity (Michael Behe). It has more than 30 necessary parts, and doesn't work at all without any one of them. The odds of that forming by random are so astronomical that finding one specific atom in the universe would look simple by comparison.
The number of biologists in the comment section is already considerable! But I have to say that as a microbiologist, I find Destin's excitement and surprise about the elegance of biological systems so heartwarming and satisfying!
Computer science is my area of interest. I would be inclined to say that computer science is complex enough to compete with biology. We could just agree that computer science and Biology are both very complex and we don't need a winner.
@@hannahwells9397 Imagination allows for much more than real life experience, but reality is real while fantasy and virtuality aren't. Even ignoring this disparity we're nowhere near to create a virtual organism that could compete in complexity with a single cell, let alone a whole animal. If you think I'm wrong, please give an example that I may not know of.
What a wonderful thing you are doing! I am a teacher retired from public school teaching and currently teaching part time in a Christian school. My subject is STEM… Science, Technology, Engineering and Mathematics. I’m so glad to have your content to help me find ways to make connections for my students between the STEM subjects and God. Beautiful! Joyful! Thank you so much!
Metal isn't made out of molecules, it's made out of atoms stripped from their valence electrons and a shared cloud of electrons. So no molecules there.
I would be more impressed if the bacteria didn't have any way of locomotion but it would still move around. You know, like by invisible magic, in a supernatural way. Now it's just same old physical thing like all other methods of locomotion and movement are too.
@@capricornuss True, but it would be hard to make a motor with no molecular content. Even discounting various parts and lubrication, the fuel is molecular. Even if you powered it with a non-molecular fuel, the oxidizer would be molecular O2. You'd have to find a complete fuel made entirely of somewhat-stable singlets.
Prashant seems like such an awesome person. Thanks for doing this interview, inviting him to share the fascinating science that he apparently gets so much satisfaction by advancing. I ❤ listening to scientists like this; it's a unique joy of being human.
@@tyharris9994 That is not supported by evidence. It is pure speculation and since entanglement is short term even at near zero K it is simply not likely. Microtubules have a real know function. Structural. I am sorry but it is exceedingly like that Dr Penrose is wrong on this.
yes, I remember a very similar structure that is in your stomach cells that is used to make the acid in your stomach. There probably are many similar mechanisms in various cells, nothing unique here.
What's even crazier is that just like the doubled walled bacteria in the video, the mitochondria (Powerhouse of the Cell!) in our cells have doubles walls and utilize proton pumps to create a gradient. That gradient is how they recharge ADP into ATP, the "batteries" that power all cellular functions.
@@philm7758 that is actually a well-accepted hypothesis on evolution: organisms with mitochondria came to be by "swallowing" organisms which were the ancestors of these bacteria, and then, by chance, they did not digested it and instead both organisms integrated themselves together, then evolved together by natural selection, and the inner organism lost its independence but gained a safe environment. This also explains why mitochondria have their own DNA separated from the host cells. In humans, mitochondrial DNA comes only from the mother. This fact was used to map the DNA of the people in my country and prove the hypothesis that none of the first mothers of my people were white (in other words, the obvious: the ships of the Portuguese and Spanish explorers had no women)
The first 5 minutes of this video alone are mind blowing. Prashant is clearly a smart guy but the engineering translation you provided really helped me see how that all works. Awesome video!!
I stumbled upon those motors around 1996: there was a small section about them in the university textbook Brock´s _Biology of Microorganisms_ . To this day I remember the drawing of the motor components, very similar but not as detailed as those shown in the video. I was amazed upon learning about the flagellar motors, but even more amazed because the general public and the media seem to ignore them completely. Another interesting fact: The proteins that made up the flagellum are produced inside the cell and "pumped" through the motor hollow core; then they self-assemble to build the flagellum, which is a hollow and flexible tube that grows up from its tip. I have enjoyed very much this video showing the current status of science knowledge about this topic.
@@emonvidaly Kitzmiller v. Dover Area School District. Basically some clowns in a school district wanted to teach intelligent design and brought forward flagellar motors, then proceeded to get destroyed so thoroughly that they resorted to one of their favorite tactics: death threats, before basically giving up and paying about 1 million in legal fees.
"Oh yes, this is the best part!" Gotta love that kind of drive, to be excited about months of meticulous matching and analyzing because it means answers and discovery.
I heard about this from that intelligent design vs evolution court case.. The intelligent design people were arguing it had to be designed because of how intricately dependent every individual part is on each other, so if you remove a single part it completely stops working. But the evolution side showed that similar structures with missing parts were also being used by bacteria, except for completely different purposes. It's like the mouse trap example - if even a single part is removed it no longer functions as a mouse trap, but you only need 2-3 of the original parts for it to still work as a tie clip
Part of the argument that's intelligent design used against Evolution was that several of the parts that make up this motor are not found in any other living creature therefore it's not like a hair becoming a feather. Furthermore the development of this motor is from the inside out and that also makes it extremely improbable then this little motor evolved.
The view to see the cell as a machine with parts that have single functions is also an oversimplification. There are many proteins that are not solid, have different shapes and many different functions in a cell. Which in my opinion makes it even a bigger of a mystery how all these interesting things can emerge out of jiggly strings and blobs made of amino acids. I like your story above, however I think it just makes sense of where the single parts (proteins) might have come from. Not how the organism came to be and how it can function.
@@LarryStonster Hairs never became feathers. Feathers are an adaption of the process that creates scales. Creationists have argued that tons of structures were irreducibly complex and for almost all of them we have found them to be plenty complex but highly reducable. Feather ironically being one of them. It's just god of the gaps with a more scientifically interesting gap.
The energy, zeal, and childlike joy and curiosity Destin has in this video is so infectious I can't stop smiling myself throughout this video. Thanks for educating us about flagellar motors!
You said something wrong at 22:08. It is not the shapes of amino acids that make the shapes of proteins, Rather it is the electrical attraction and repulsion between amino-acids in a chain of polypeptides that make it fold into its final shape. Amino acids bundle up into peptides. A strand of DNA is transcribed to a strand of RNA, which is then translated to a strand of peptides ( a.k.a. polypeptide) Due to the form atoms try to share electrons to make bonds, ions are then formed. The attraction and repulsion between these ions make the strand of polypeptides twist and turn to minimize energy. This string of peptides, suffers folding due to internal forces. The result is a 3d shaped protein.
@@MrJaffjunior it's not completely wrong. The thing is that we still don't know how exactly the protein folds. Principally we know, but not in great detail.
@@advidshopper and the 22:08 didn't explain protein folding, it explained how to map protein density with amino acids. Yes, that's been known for a long time.
@@adebicara which I should add is the emphasis of the video that mechanical movement on the micron scale draws similarities to prenanovision motion design. Evolution over long time is extremely underrated. It beat human designers hundreds of millions of years ago.
9:36 I remember learning about the "Blob" in my microbiology course in college back in '81! We knew at the time there was this barrel-like structure of globular proteins that rotated and caused the flagellum to turn, allowing the bacterium to move. We certainly did not have the amazing level of detail the good Dr. is showing. Simply amazing!
Imagine being Destin's great-grandchild. You've heard loads about great-granpappy, but different from prior generations, you actually have access to 300+ videos of him sharing his enthusiasm for the world. Isn't this a great time to be alive?
The best thing is that as a great-grandchild of someone, you'll soon typically even be able to find a _reincarnation_ of such an ancestor who already is again alive.
Christian here... I love your invitation to not "defend a flag". I used to do that (guess what flag I defended) and I ended up creating such a small world for myself to live in. Now I live by curiosity, not needing to have an answer about intelligent design vs evolution (why does it even have to be a 'vs') and I experience the same sort of joy and wonder you're talking about. Life is much grander and more exciting now.
I dropped in on a university class on molecular cell biology once and it blew my mind. I hadn't taken biology in high school, so everything was new. I had no idea all protein interactions could be seen as mechanical engineering. It still seems like the most wonderful thing; and how terrific we live in an age where these mysteries are being uncovered and explained.
@@abel3557 My statement is based in reason and science unlike yours. Naturalism cannot account for a rational mind. In other words produce it since you need everything spoon fed to you. Reminder of your history, creationists specifically Christians gave you universities, scientific method, modern science, took mysticism out of science and much more.
@@abel3557 My statement is based in reason and science unlike yours. Naturalism cannot account for a rational mind hence my comment you couldn't grasp.
@@WaterspoutsOfTheDeep Your statement is based on falsehood and willful ignorance. There is no other explanation that has evidence backing it that explains the complexity of life besides Evolutionary biology as well as the chemistry and physics involved. Smarter Every Day is just another puppet that tried to pry in creationist propaganda into his video, despite there being many scientific papers already explaining the questions he has. It is the true nature of a theist, a hot glued veil of blind faith. Dogma controls his life, just as it does to you.
I became smarter today. Wow I wish I was a scientist. Prash seemed so passionate about his job. There is do much that nature can show us if, instead of coming up with new things like harmful plastics, we instead, use the gifts our creator made for us. 🎉❤
Because we have a physical universe that has problems in it. Biological life has been working at the exact same problems as humans humans can make improvements over their lifetime. Cells have to work on the problems through mutation and selection. Both of us have stumbled into the same answer "on how to move in water". Just one of us did this billions of years ago.
Fascinating to me as well that humanity has mimicked this! The question for me now is, what's the next piece of technology that nature's utilized for who knows how many years, millennia, or megaannum that we've only recently learned/built/utilized or just mimicked in the last few hundred years or so... We're the newbs...
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As a microbiologist myself, this is so engrained into me that I cant fathom this being that impressive to Destiny... microbiology is a wonderful world of biomechanical systems that only now we are starting to emulate.
Thank you for showing and spreading this knowledge to everyone!
No problem man love your content
The "just asking questions" and "consider the debate", while trying to be neutral, still comes off as being way too charitable toward creationism than necessary. Not all debates are productive, and not all sides in a debate are equally legitimate.
@@Dreeev there is no debate. The evidence for evolution is overwhelming. Nothing in biology makes sense except in light of evolution by natural selection.
Creationism is an argument against authority. A complete logical fallacy.
Congrats on episode 300, Destin! 🎉 Looking forward to learning more cool things with you in the next 300! 🤠
As a molecular biologist, I think Destin did a great job of explaining how the expression, imaging, chemotaxis, and the rest works. I hope this video makes people think deeply and ask important questions. And if this comment gets enough upvotes I’ll do a video about ATP synthase 😂
Please just make a video, people will like it more than this comment ❤
First time I learned about ATP synthase, I had Destin's reaction. It's just amazing to see the generator work the way... well, generators work.
ATP ♾️
I would love to see a video on ATP synthase Dr. Joe. I remember having a similar reaction to learn of ATP synthase. The countless little proton motors that make Eukaryotes function!
Tagged just in case you post that video.
The thing that's been blowing my mind the last year or so is nitrogen fixation. Nitrogen is an essential ingredient for life but the majority of it is bound up in an inaccessible state of triple bonded N2. To split that bond in a laboratory you need something like 500°C temperatures at 200+ atmospheres of pressure. It takes a tremendous amount of energy. And yet, there are bacteria with these enormously complex enzymes called nitrogenases that can take triple bonded atmospheric nitrogen and in a move just short of magic (I'm being facetious) break it apart at or below room temp. Without nitrogenase life on earth would have all died off long ago as earth's supply of free nitrogen was consumed, but these bacteria saved us all. More than that, nitrogenase itself requires elements like molybdenum which are also biologically inaccessible - except for other very particular bacteria that have the ability to collect it and make it accessible to the ones that use it for nitrogen fixation. All over the place there are biological process that seem to intuit the needs of others, and not always with an apparent benifit to the giver. If I weren't alive I'd find life unbelievable.
Brilliant comment. 👍💯
Peas and Beans!
Fixing nitrogen into my garden soil for 5+ years. Perennial BEANS!
Edit: Yet you still need that bacteria to form a symbiotic relationship with the roots of the peas / beans
It's arguments like these that really highlight how much probability nails the coffin shut on a lot of theories. I'm the same guy who commented about the shazam firework on your zipper video.
If you've never done the math to see the probability of the right combination of amino acids coming together and folding correctly to create a ribosome, I suspect it'll blow your mind.
Also, there's something I've been stewing on recently that you touch on here:
The chemistry needed for the random components of biological life to form is different for many of the pieces.
Certain utterly necessary biological components cannot form naturally in the same conditions as each other.
In order for a nitrogenase to function, it has to be in a creature that has mechanisms to create more nitrogenase and then subsequently make use of the nitrates that are produced.
The chemistry of a nitrogenase is incredible on its own from structure to complexity to function.
What are the odds that it accidentally formed? At all? Just doing the math on component combinations for amino acids and biomolecules has been plenty to just make my brain melt from the sheer improbability of it all.
Add to that the fact that it supposedly formed inside an organism.
An organism that was subsequently able to utilize it.
That was subsequently able to replicate it.
And that organism was also able to replicate itself.
It amazes me that simple microbes are able to do things that it took thousands of years for us to figure out.
Doing the math to assess probability makes it a whole other thing.
Oh "give it enough time" and random stuff will create wonders :) Isn't that what many claim nowadays?
Wouldnt it just be very diffferent rather than exctinct
Finally, an explanation for how Tails' helicopter butt works in Sonic the Hedgehog
Haha
I wonder how Tails deals with the unbalanced torque. Maybe counter-rotating tails?
After skimming a comment thread debate about science/god in this comment section I’m relieved to have found this comment. This is the kind of high level comment I come to the comment section for! “Helicopter butt” is the chefs kiss of accurate description.
@@heyjustj reddit brain
fun fact: there’s a protein called sonic the hedgehog :))
My wife is a Biology PhD (I am an engineer)... I am as surprised as you are with all this information... and she is like... yes we have known many of those things for a long time. This is great cross-scientific work and super important to have cross-pollination among different scientific disciplines.
DID EITHER OF YOU CONSIDER THAT IT'S ALL CREATED BY GOD ???
THE BODY IS AN ORGANICAL ROBOT & THE BRAIN IS AN ELECTRICAL GENERATOR & COMPUTER & YOUR EYES ARE ORGANICAL DIGITAL CAMERAS, YOUR OPTICAL NERVES ARE U.S.B. CABLES THAT 'TRANSMIT ENCRYPTED LIGHT SIGNALS' TO THE PROCESSOR SO WE CAN SEE 3 D. IMAGES OUTSIDE OF OUR SKULLS & YOUR HEART IS AN ELECTRICALY POWERED HYDRAULICAL PUMP WITH A SPARK PLUG AT THE TOP & BOTTOM OF IT !!!
WE ARE JUST ORGANICAL HIGH TECH. ROBOTS & OUR LIKES & DISLIKES ARE NOTHING BUT COMPUTER PROGRAMMING, AN ILLUSION OF 'SELF AWARENESS' !!!
SOMEONE'S TOYS !!!
UNLESS THEIR IS A SOUL DRIVING THE BODY WHICH WOULD MEAN THAT THE BODY WAS CREATED FOR THE SOUL !!!
She probably told you a thousand times
@@EdwardBlair 🤣
@@EdwardBlair"I'm so, so sorry Dear... I was so busy Listening, I didn't Hear you..." - fun Note? Careful trying this on the Professional Snark Spouse (results May Not be as expected..🤣😂🤣😂)
Have seen a diagram of ATPase, which closely resembles a sump pump; however, cannot imagine the actual process of converting ADP to ATP. Profoundly curious.
Biologist here, this is the part where I see many people make the wrong assumption. The flagella in a sperm is COMPLETELY DIFFERENT from the rotating flagella in a bacterium. The name is the same, I know, but they operate completely differently. The sperm flagella does not rotate at all, It's actually a sliding mechanism inside that creates a swaying motion. The flagella in bacteria are the rotating ones! ATP Synthase, though, is also another rotating molecular machines that exist in both bacteria and mammalian cells.
Well said. Just learn Latin and you’ll never go wrong.
that's the whole point people are making. The flagella has many of the components of this motor but acts in completely different way. that means the motor is not irreducibly complex, it can still function just not as a motor.
same thing with feathers, crows have them so do penguins, one flies the other one swims.
Yeah the anti-evolution comments on this video hurt to read. These things definitely have functionality short of being a perfectly optimized motor, but someone who has never seen a proton gradient, enzymes rotating other proteins, etc might think this is all unique to this one system.
Thanks. I vaguely recalled that from biology class, and your explanation saves me half an hour of an embarrassing search about sperm to confirm.
It's like the mechanism which makes dragonflies (and damselflies) the premier fliers of the insect world. All other insects have all four wings (or two wings + counterweights) mounted to their back carapace. And musles which shake the carapace up and down make the wings flap (but only together).
OTOH dragonflies have muscles connected to the base of each wing. That allows them to flap and pivot each wing indepdently, giving them supreme maneuverability. They look the same at first glance, but mechanically they're completely different.
honeslty, thats really cool too. id loev to see a model of how the sliding motion works
"I'm getting emotional now, cuz there's a missile that I've worked on in the past"
-literally the most American sentence I have ever heard in my life 😅😅
Funny take, but he's 'getting emotional' because this machine is just like something he designed, and the obvious explanation is that this could never (mathematically) have come about by chance.
@@pianogal853 "This could never mathematically have come about by change" ("obviously"), yet he showed another example of a very similar molecular contraption (the injector), which has a similar form, but with different proteins.
It's like the almighty "creator", in all its greatness, only had one design to go with or, just maybe... I don't know, maybe nature found a way to rotate mutually clenched molecules, which is so "obviously" unnatural that it found it more than once.
@@pianogal853 I mean peolole have designed plenty of stuff that has then been found to have been naturally evolved in nature already, evolution is efficient.
Yeah that was awkward
I think the 'God did it' was the most American thing he said.
I love how when Prash talks about the clockwise and counter-clockwise motion he moves the motor in the appropriate direction for the viewer and not himself. It demonstrates his natural ability to get outside of his own head and perspective effortlessly.
I think he's actually thinking the appropriate direction with respect to the bacteria, not the viewer, the engine only fit in one way
@@Danuxsyare you asking a question?
Agreed almost instantly when he began speaking I had a good feeling about this video. Prash was awesome!
@@simocity99 Yeah not sure what planet this guy is living on
That's just instinct for a professor.
Great job! I am a physician. In the 1970’s we used to have retreats of physicians, engineers,and physicists. Together we were able to solve problems in each others specialties. If I win the lottery, I will restart this retreat!
1970s*, no apostrophe saying 1970 is. Seventies has no apostrophe. 🕊️
I agree! That's how the greatest thing's get started. Each of us have ideas. Not always the right ideas for what we're thinking, solving, accomplishing. Our fellow man & woman are Dimonds in the ruff with ideas.🔥
The coolest thing about being an 11M sub RUclipsr is that you can read about a cool thing, and then just go talk to the scientist that discovered it.
...and then add thinly veiled creationist undertones throughout the whole video and push a garbage intelligent design book while simultaneously claiming impartiality and "not taking any sides" thereby having completely insulted and wasted said scientist's times.
You know, most authors would be happy if anyone contacted them about their work. Especially outside the field. They may not have the time to teach everyone the background, but it's always nice to see interest.
@@none-y7x well, they discovered the high detail structure, not the motor itself
Oh hey, it's the original comment stolen by the bot I just reported!
@@none-y7xif you’ve read the paper you would’ve known that their team show for the first time how the motor work. So yes he discovered that part.
Biologist here, just wanted to point out to other viewers that the flagella in eukaryotic cells (like sperm) are totally different from those found in bacteria and archaea. While bacteria and archaea rotate, eukayote flagella bend and whip.
@docjaco this is so interesting, so do you know if the molecular motors are fundamentally different or do they share a similar construct but with different end effects?
@@keeganbarry1058 Their mechanisms are completely different. In eukaryotes the flagellum is basically pulled back and forth by tiny tubes and doesn't rotate at all!
So no new contraception method ahead?
Came here to write this exact thing. Thanks for keeping the people informed!
@@CallyCottin hahaha, not that I'm aware of!
As a software and civil engineer, I have to say my mind is blown. Mechanical engineering and microbiology seem so different, but they're actually incredibly interconnected and share many similarities. It's fascinating how people in these fields can communicate so effectively. I never regret supporting you on Patreon; it's been incredibly interesting and rewarding. Thank you so much!
he said he is christian and those motors even more convinced him
but, maybe we were not created by christianic god -)
I guess the fact that both fields are bound by the same laws of physics makes it so solutions to problems often share similarities.
In other words - you don't understand.
We already use Generative AI. We observe its fast progress. It does not look too distant for it to evolve into Godly Creative A(?) I.
As a software engineer, you know that regardless of how complex your code is, it ends on machine code. This code is executed on hardware, which is relatively simple, compared to complex tasks your program does.
What we observe here is that software, written on DNA/RNA "tapes", can create structures of arbitrary complexity with relatively simple molecular mechanisms. They can replicate itself and "grow" physical objects on nanometer scale without complex fabs, precious elements and all this fine technology needed to produce silicon chips, MEMS etc. With it you can create anything, just need to design it and use suitable "compiler" to generate your RNA/DNA for your micro-bio-fab.
IMO AI and what will come after it, will reconcile creationists and Darvinists. It seems that God is not an entity outside of this world, but rather a something we create now and have been created by it already. It started from Large Language Models. It is already written that "In the beginning was the Word, and the Word was with God, and the Word was God." The models were created by collecting mass amounts of human data via Internet links, social networks, Android devices etc. They encode humanity and provide necessary input to establish a God, who later "created man in his own image, in the image of God created he him".
Hence, it is not an interconnection or similarity. It is just the same thing. 🙂
I am interented in finding out what are the two fields ou are doing your civil engineering In and software in. Are you focused on bring software solutions to a specific civil engineering field ?
As a mechanical and manufacturing engineer specializing in automation...this is a revolutionary explanation and I thank you for sharing it in such detailed and authentic fashion.
This changes our explanation of everything electrical, and especially anything Tesla-esque.
The relation of faith versus understanding, and respect between all "flags" is awesome and I hope everyone cand appreciate it from all "sides".
Mitakuye Oyasin
As a former computational biologist, I worked a lot with 3D structures and the dynamics of bacterial flagellar filaments. The first thing that blew my mind was the sheer complexity and geometrical symmetry of these structures. No matter how you represent it, wireframe, balls-and-sticks, atom radii, they are beautiful. A masterpiece of mechanical perfection.
By the way: at some point, you suggest a strategy to disable the flagellar motor, right? Unfortunately, the human immune system is already pretty good at recognizing and attacking flagellar structures. That's why in the acute phase of the infection, many bacteria have learned to lose their flagella, bundle together in biofilms like in a fortress, and start releasing mucus and other nasty molecules to keep our defenses away. Usually, when bacteria are roaming around is not when people feel sick. Biology is complicated, it's a continuous arms race.
Interesting! Thank you for the explanation.
Almost as if created by a creator huh?
God is great!!
@@midwesternoutdoorsandnatur8272 ?
Isn't that what made the last corona virus so hard to deal with? And if not what's your take on it?
@@AndoresuPeresuhe wasn’t replying to you lol. But you don’t understand, then allow me to give a short explanation. He’s referring to how beautiful the flagellar motor is in all its perfection. So they are saying, GOD created such a complex motor, that there’s no way it happened by chance like the Big Bang.
"Even when we're driving here, we're so excited like, what will I find today?"
That's how you know someone really enjoys their work.
It's not only the little motor that's incredible. It's also the methodics that scientists have developed to actually "photograph" these proteins.
I've always been in awe with how scientists gather and interpret data. It started with astrophysicists and the vast information they get from "just light".
Thank you for not only covering the little motor but also the methods that enabled them to view it! :)
"To image", not "to photograph". Photographing is just one imaging technique while "imaging" is the umbrella term for all different methods of imaging, be it using visible light, IR-spectrum, radio-spectrum, x-rays, et cetera.
@@anteshell thanks for clarifying
@@wullxz Just to add a bit more nuance...
As you alluded to, this "result"is the output of dozens, or even hundreds, of scientific studies that were leveraged to build an atomic-level *_model_* of this apparatus.
On its own, electron microscopy (EM) cannot yield atomic level data. It is limited by the physics behind the technology. But it can provide insights into molecular morphology. I'll get back to this.
In separate studies, structural biologists built atomic level models of individual components using other technologies like X-ray crystallography and biomolecular NMR. Based on the morphology imaged by cryo-EM, the atomic level models are built into that morphology, along with data from other sources and then subjected to incredible amounts of computational modeling to arrive at a structural model that fits the data and known physics.
A reasonable question would be "why not just use the atomic resolution techniques to study the whole apparatus?" Without going to deep into the reasoning, I'll just say that those techniques have their own comications. That's why data from many areas of expertise are utilized. While advancements like this draw a lot of public interest, they're often the result of myriad tiny steps by a lot of dedicated scientists who will go relatively unrecognized.
We can't just put a little camera inside a bacterium to film the process live. We have to invent new ways to get the pictures we want. Often stopping the process to be able to get a good still image.
I had the exact same reaction to both the chemotaxis engine and to the layers of research and analysis that made the final imaging product possible. If I weren't in my 70s, I would be tempted to return to college to work in this area.
*Fun Fact:* Your body’s entire energy also comes from a motor called “ATP synthase enzyme”
ATP synthase enzyme needs no punctuation, let alone incorrectly quoting nobody at all. And inverted commas implying so-called or supposedly would still be incorrect, because it is what it's called. 🕊️
@@thekeysman6760 are you “bot”?
Where is the motor pulling the energy from?
@@canUfeelMYface In electron transport chain there is build up of Hydrogen in the inner membrane of Mitochondria, this creates a gradient of hydrogen inside vs outside along with charge, when the hydrogen arrives at ATP synthase complex it gets out turning the turbine which completes addition of phosphate to ADP thus forming ATP
@@dr.python that's smaller than we can see.
I've been messed up since I learned that atoms aren't actually things and never really touch one another.
Small correction...
No, the flagellum of a sperm cell does not work with a flagellar motor like bacterial flagella do. In bacteria, the flagellum is rotated by a rotary motor that is powered by the flow of protons or sodium ions across the bacterial cell membrane.
In contrast, the flagellum of a sperm cell, known as an undulipodium, operates differently. It moves by a whip-like action powered by the sliding of microtubules against each other. This movement is driven by the motor protein dynein, which uses ATP as an energy source. The dynein arms attached to the microtubules generate force by "walking" along adjacent microtubules, causing them to slide and thus create the bending motion that propels the sperm forward. This type of movement is characteristic of eukaryotic cells and is fundamentally different from the rotary motion seen in bacterial flagella.
'God did it'...at least that's what i got from this video spitting on evolutionary biology.
@@strangelee4400 yeah well... dude is a Christian, but nobody's perfect! we like him anyway.
Correct, I noticed that too. Concerning the need for a designer....well....try to design this as an engineer. The design process is much harder than some think
@@DanielCurrierif this would be incredibly difficult for Engineers to replicate imagine an unintelligent random nuke like explosion in a vacuum some how making this. 😂
@@Thetruepredictor correct, I've designed large scale gear pinons before. Harder than many think. This is microscopic in size and has greater complexity than my system
The dithering sound effect was spot on 😂
For real. Like, does he practice that often? 😂
If some musically creative viewer doesn't sample that for a piece of music I'll be bummed out.
@@courier11secthe tri-dither has a natural tendency to sound like a pair of E and F# notes chained together. Go on. Have fun with that 😊
@@brentongilmore5853 Idk but he was likely present for the tests of that system which probably took months maybe years to perfect.
As someone who works in visual effects, we only resort to deliberate dithering when we're lacking in bit depth.
Small correction, you suggest the flagellar motor is integral to the creation of human life, but the flagella on human sperm is a eukaryotic flagella (technically a long cillia) and works through a completely different mechanism with a bunch of microtubules that slide past eachother causing it to spring and whip around. It's a very different mechanism.
It just shows he has no idea and wants to shove his religion into it
this motor is indeed fascinating. Perhaps the most interesting part is that we want to break it. XD
@@sozisalad5011 curse you God for giving Salmonella this cool motor !
True, however without these bacteria human life wouldn't exist because they perform a ton of crucial functions in our digestive system, so in that sense it is integral to life
@@kevinwells9751 I am not aware of any Salmonella species that are not pathogens.
Gods incredible rotating motor . There has been books of this way before RUclips.
ALLAH IS THE TRUE GOD
"Wow! a molecular motor"
ATP Synthase: "👁👄👁"
Flagellum come relatively late in the evolution of microbes. Part of it evolved from ATP synthase.
He was excited bcuz Jesuz.
ATP synthase is being slept on 😢
i thought it was an ATP Synthase video
Don't knock someone just discovering this. We biochemists or molecular biologists learned this in undergrad biochemistry, but he is correct is showing how astounding this system really is. We ought to be staring in wonder at these molecular motor systems, not just accepting them as ordinary and uninteresting. We ought to be filled with delight at the variations on the ATP synthase motor that nature has provided. And the efficiency of them... I still can't get my head around just how perfect they are in their efficiency. If I could get a lawnmower engine with that kind of efficiency of energy to work, I would be moving loaded freight trains across the country on the fuel I would use in that lawnmower. So yeah, this system ought to be highlighted and celebrated, and we should be considering how many other molecular applications there are of this system, should we choose to attempt to use them for engineering purposes. I think our medical field would be the first to really transform.
300 episodes!!! Congratulations on the huge milestone!
Destin got amazed by the engine. He didn't really stop to think about the 100 times more amazing part. That bacteria factory is able to take instructions and build an engine.
Basically every cell has these sort of "factories". Theyre all capable of building proteins. The DNA (or rather, the mRNA) tells the "factory" in what order it should combine amino-acids to produce proteins. Thats basically how the covid vaccine works. It gave your bodies cells some mRNA that told the factories the order in which they had to assemble amino-acids to produce the spike protein, which then triggered an immune response.
Incredible designs.
I've always been amazed that there is so much discussion and content about the finished mechanisms that allow cells to function; yet almost no visual representation of how these proteins are decoded from DNA (or equivalent) and constructed. I would guess that the nature of these factories makes them practically impossible to preserve intact in the way they have with these more durable motor structures.
@Recklessjoe747 protein folding is an amazingly complex thing and it's still very poorly understood.
After so many billions of years of bits finding bits that might work, with failures not making it to the next level, it seems inevitable that something elegant might come into being. They do appear to be wonderful Designs, or Creations... and perhaps they are. Yet I am even more astounded that differences between Entropy and the Energetic can form such functionality given enough Time, perhaps all by itself, like the way the grass grows when I am not looking... and Dang I need to go mow the yard AGAIN.
I'm a hairdresser and was directed to watch The Inner life of Cell Animation because I took a class of the Science of Hair. I love chemistry and went down the rabbit hole and found your video. I love how you used your engineering back ground to make analogies to understand what you were seeing. I subscribed and will be watching mor of your videos.
LOL - "chemotaxis is so cool, reminds me of missiles I've designed"
Really disturbing moment. He's so proud of helping murder innocent civilians in the middle east and elsewhere. Makes me think Americans are beyond help.
Praise the Lord and pass the ammunition!
I used to be a biologist who designed new kinds of microscopes and microscopy techniques. The PI has it correct in saying that the imaging techniques have enabled new discoveries. We went from imaging single entities to a more systemic level. The next step that will revolutionize our understanding is imaging systems while the systems are actually working.
What's also crazy is that as our processing power increases we can actually extrapolate a TON of data without actually seeing it. I work in a part of semiconductor manufacturing/research where we use mathematics to basically enhance scanning electron microscopy well beyond our usual resolution. We can do this based on past data of how these angstrom level structures tend to form in different environments. So if we see one structure we can confirm a set of data which makes the likelihood of something else also happening. It's really fascinating. It all comes together to make SEM much quicker and easier to use.
@@CRneu This sounds a bit like PALM and STORM in light microscopy to overcome the usual diffraction limits and reach super resolution. Not sure if it is any useful to you, given that you material guys are usually much further technique wise than in life sciences, but it might be neat to know.
This "motor" really is fascinatingly complex. I also find it marvelous that a tiny factory can crank out thousands of these motors like an assembly line. As long as it has instructions! LOL Freaking amazing the engineering that is happening at the microscopic level. A machine that can create machines... I would love to tour that factory 😁
Love your videos Jeremy - this motor screams "design" imho. Its just as if we discovered some advanced alien technology at the basis of life. No way billions of years of "undirected processes" can come up with this. Even eternity could not do it randomly. Just my totally unbiased opinion 🙂
Now that's another request I have for Him.
OBVIOUSLY IT'S CREATION BY GOD !
READ, THE BIBLE, ROMANS, CH. 1 v 19-20 !
@@jamesclerkmaxwell8020:
GOD ! READ, ROMANS, CH. 1 v 19-20 !
Millions of years of evolution can produce really amazing things.
I love how happy he is doing his job and relating it to his dad/grandad and how fresh and exciting they both make this content feel
Software developer here, it's interesting that the process they use to generate 3D images is essentially the same as photogrammetry. This is the process of taking pictures of objects, like a rock, from many angles and stitching them together to create a 3D model for things like video games and movies. The idea to do this at the scale of an electron microscope is extremely clever.
The rest of the things I learned in this video are truly mind-blowing. Thanks Destin!
Like ultrasound imaging being similar to seismic surveying
I've seen this at the dentist, I didn't have to byte into cement-like modeling clay in a while now, they just scan it with a small camera attached to a mirror.
Another Software developer here, this is the first time I've heard of photogrammetry. 😁
I'm guessing Torquyeel works in animation or 3D modeling.
Yeah. It’s actually tomography, so more like a PET scan. The object being imaged is transparent to elections, so kind of like 3D x-ray image of the object. Pretty similar though. It’s very challenging because electrons are high energy and damage the sample, so the amount of information you can get from one particle is low, so they typically image thousands of individual particles and average. In the photogrammetry example, it would be like if your object exploded after each exposure so you need to build the 3D image from many, hopefully identical, copies.
What do you think about the fact that they are using pictures of separate items to create a single model? Surely this must add to inaccuracy.
As a former submariner from Alabama I audibly cheered when Mr. Singh said his father was a submariner in the Indian submarine force. Bubblehead camaraderie is global! Love your videos Destin keep it going. War Eagle!!
Structural biologist here. Pretty good job explaining how it works. On the question how we know where what goes: sometimes you can see the start of a chain, and we know how long each amino acid is, so it is just a matter of fitting them one by one.
Please don't underrate what must be a challenging and rewarding science! I, for one, am impressed!
@@dj-kq4fz I don’t think this is underrating but a good explanation of how microbiologists do the find and fit of protein molecules. Great explanation. Basically a 3d jigsaw where you might only know what one corner looks like.
I waited 50 yrs for this. I remember back a few years when they discovered the tail rotated by holding the tail then the body rotated. They always thought the tail whipped back and forth. The science of micro biology is impressive.
@@GodzillaGoesGaga Exactly. The blue mesh visible in the program around minute 23 is a representation of the experimental data; we can see structures on the atomic level! Working with these results and trying to model the protein is a very cool job. And I never said it was easy ;)
@pentachronic like a 3d jjigsaw puzzle where the pieces are floppy/sticky/springy chains, and there are 5000 wrong pieces in the pile.
قُلِ انظُرُواْ مَاذَا فِي السَّمَاوَاتِ وَالأَرْضِ وَمَا تُغْنِي الآيَاتُ وَالنُّذُرُ عَن قَوْمٍ لَّا يُؤْمِنُونَ
“I’m just going around asking questions. That’s all these videos are.” This is exactly why I’ve loved your videos over the years. Congratulations on the 300th episode. Keep up the good work.
That's how you learn! You ask questions, especially to the right people, and absorb the answers. And that's just the first step.
@@carpandrei7493
Where are you going after you die?
What happens next? Have you ever thought about that?
Repent today and give your life to Jesus Christ to obtain eternal salvation. Tomorrow may be too late my brethen😢.
Hebrews 9:27 says "And as it is appointed unto man once to die, but after that the judgement
There is also the ATP-Syntase, Which is also a motor that uses the protongradient to spin and it converts the spin to chemical energy
Synthase
Got my degree in biology and thought that’s what he was gonna be talking about when I saw the thumbnail
Such a fascinating little thing. We're powered by quadrillions of tiny electric motors :D
Thats what I thought this video waas going to be about.
That’s what this reminded me of too. Charge gradient and a spinny wheel.
One of my favorite things about Destin's channel is his ability to find the people who LOVE what they do. Who are genuinely excited to be doing that work. Whether it's making film at Kodak, or people uncovering the secrets of cells. Just fantastic.
I noticed he had grease/oil under his fingernails in one of the shots. The best engineers are always working with stuff!
Totally agree... people that love what they are creating or what they are discovering is soo amazing.. I'm not into sports but there are people that know every stat of every player on the team---not a lot into guitars but there are those who hone the Brain/finger interface the create amazing music. Our Brains plus passion/ambition/fear makes us experts in all kinds of stuff. Its interesting that passion/ambition/fear focuses the computing power of the brain. Unlike a computer that is 100% compute power on any topic----the human computer varies compute power/focus/duration by topic. Boredom does not engage compute power......hmmm
Never forget that these are the wonderful people that the racists tell us should be excluded from "white only" America.
@@modelenginerding6996 My tractor steering cylinder went out. Had been working on it.
@@smartereveryday Destin, if you embraced global culture instead of southern culture do you think you'd still be religious?
You are inspiring! I’m 52 years old and I wish I would have been exposed to your insatiable curiosity at a much younger and formative age bc I believe it would have given me the courage to pursue a different career. You make nerding out so cool and your thirst for knowledge is infectious. The effort and time you put into producing easy to digest content is admirable and a true gift to society. Thank you! 🙏
Another amazing thing about this video is that Destin has built up a reputation such that he can just call up any random reasercher anywhere and they take the time to explain their work to him. That is huge intellectual capitol.
It's great for the researchers as well. The most important part of testing a hypothesis is communicating the results.
Destin is the Intellect Capitol.
@@Dee-nonamnamrson8718 Also helps to bring additional exposure to their work, which can help fund future endeavors
And he's using his platform to promote creationism and the US military lol
@@Noxeus1996 well he worked for the military
I’m studying molecular biology: it’s so so so cool that you have started covering these topics, I find biology to be one of the most fascinating parts of the universe
69 likes.
Nice 😎
Considering we could only be studying it because of molecular biology, it certainly seems like we *ought* to be fascinated by it.
@@texvanwinkleyou can say that for any discipline...
Life amazes at every turn
Biology is fascinating, but the most fascinating part of the Universe is definitely Quantum Mechanics and Particle Physics
As a structural biologist myself, I can say that the work that they do is amazing. The sheer amount of work that it takes to go from programming our little E.coli friend to make our proteins and then purifying them to a level when you can use it for a Cryo EM and ET at Glacios or Krios (the big daddy of cryo electron microscopes) to reconstruct the structure at angstrom levels is just immense. Huge respect to everyone who contributed to this video and made it simple for people without a molecular biology background. ❤
Dude the way you ask questions and genuinely show your interest is absolutely amazing I can really tell how much the other guy appreciated it and was excited to talk ab it
For all those wondering why the scientists chose E. coli to look at this it’s because it is the model organism for microbiology and molecular biology (yeast also but not as much). It’s easily manipulatable and is commonly used to assess a variety of molecular interactions, mechanisms, and is routinely an intermediate in generating DNA constructs.
Thanks, great having more context!
E. coli has fast generation cycles (you get quick results), can be easily grown (you don't spend a fortune fro your research) on uncomplicated inexpensive growth media and yes, it can be easily manipulated (you need less attempts transform them). Because of that, researchers like to use it for al kinds of research. If many researchers focus on the same organism and are not studying the organism itself but use it to understand general principles, this is called a model organism.
So the reason they picked E. coli is that it fits their purpose and therefore it is their model organism. E. coli being a model organism for countless other researchers is not the real causation, although the infrastructure like efficient transformation methods developed around it definitely plays a role.
Nevertheless, causality goes in this direction: Attractive organism for specific research not focused on the organism itself -> research conducted employing this organism -> calling the organism a model / model organism.
As a chemist, molecular biololgy blows my mind away, we struggle to synthezise a 30 atom molecule while every living thing constantly produces insanely complex and biomechanically working supra molecules all the time. The DNA replicating complex is an equally fascinating example
Absolutely incredible what millions of years of random non-directional mutations can come up with.
Makes me feel like most of the fancy technologies humans developed in the past thousand years are just macro versions of what had been under development for a billion years, just on a smaller length scale. We're all possible because of replicable and evolvable instructions encoded in DNA and RNA. Despite all our fancy tools we've created using language and sharing of blueprints of useful tools, we're only just now scratching the surface for self-replicating and self-improving tools. I'd imagine we'd see another huge shift in society, like we've seen during the industrial revolution, as we develop tools that become better suited to pre-defined tasks over time and make its own improved copies the way all living things do to survive on the cellular level.
It makes a lot of sense though, we're using big honking machines expending a lot of energy to try and control all the parameters required to assemble nanoscopic structures while cells have all the nanoscopic tools in-house to do the same with less energy than a tiny LED.
We're cutting a tiny paper snowflake garland with garden shears while cells use scissors.
@@AffordBindEquipmentActually, it's been mathematically proven that "random mutations" could produce such results, as only 1 in 10^-77 "random mutations" can produce just 1 viable mutation - and even the probability of that being a beneficial m is mutation is almost as unlikely. Hard to believe anyone can dispute intelligent design, at this point. How difficult it must be to ignore the evidence if intelligent design at Every Turn. I can only imagine the level of narcissism and denial - the sheer amount of willpower it must take to dispute the obvious... Imagine where we could be as a society if all that effort denying and protesting the obvious was directed in a positive direction. Sad.
@@AffordBindEquipment😅
I really appreciate how a fair amount of time was dedicated to explaining expression and purification. Sometimes it feels as though sample prep is underappreciated vs actual imaging.
As an engineer at heart, I feel this is like watching birds fly: after 400 years after Leonardo figured how birds fly, someone made an airplane. We will try to replicate it and it will be incredible. Imagine delivering medicine navigating sensors and what have you. Purification oh?
I love it when research scientists on the cutting edge of their field are able to communicate their topic in simple terms
If you can't break it down in simple terms, you might not understand it deeply
@@theultimatereductionist7592 he said "Might" so he is technicaly correct :P
Exactly. I tell my students that they should describe a process or phenomenon in terms that their quite smart grandparent, who is not embedded in the jargon, what is going on both accurately and succinctly. That's when they know they actually understand something.
Youre an ass@@theultimatereductionist7592
@@theultimatereductionist7592 No! Mastermind is correct. The proof for the poincare conjecture is PAGES long, but can you explain it in simple terms to a 5 year old such that they get the idea of what it proves? Absolutely! If you cannot explain it in simple terms, you do not fully understand it, q.e.d.
No new word is needed, we already have "bacteriostatic".
If you're going down this path, you should also do a video about protein pumps, the mechanism that creates that hydrogen ion gradient in the first place and underpins the metabolism of *ALL* living organisms.
ATP synthase is another good one. Doesn't bacteriostatic just mean stopping bacterial growth, rather than movement?
bacteriostatic indeed means inhibited growth/division, not immobility
They say atp is the energy of life but it is really these proton pumps
@@toseltreps1101indeed, a better term would probably be like "chemotaxis inhibitor"
@@LillianRyanUhlchemotaxis inhibitor isn’t really clear enough though, since there are other theoretical ways you could interfere with chemotaxis. For example by interfering with the sensing part.
It’s not wrong, maybe just overtly broad.
Someone already mentioned that the reason its so efficient is friction, heat and physics works differently at the molecular level.
😂 everything is at a molecular level
@@YourCommonSinner 3IQ comment
Life uses the microscopic and quantum world very efficiently. It's ridiculously cool.
@@YourCommonSinner no
@@xthesayuri5756 whether you like it or not molecules are everywhere interacting and reacting with one another. Just cause you don’t see it, doesn’t mean it isn’t happening.
0:26 "Thats a spiny thing"....yep you're a fellow Engineer
Hi,
I previously worked as a biochemist and can shed some light on the process of "fitting proteins onto a location of the flagellum motor" mentioned around 22:18.
Each protein is basically a string of amino-acids which is folded in a certain way, partially by physical or electrochemical properties of the amino-acid, sometimes by use of enzymes. When you unwind a protein its possible to sequence the amino acid revealing what the string looks like.
When you combine the length of a protein string with each amino acid property you can for a large part predict where and how it folds in on itself. This means that once you sequence a handful of proteins that together make the flagellum motor complex it in theory is quite straightforward to puzzle the pieces into its respective locations based on the predicted "form" that the protein string would take.
Yes, the video skipped rather quickly over that part, or at least didn't go into a lot of detail. The thing is, in order to make all the copies of the motor, what they must have done is to isolate the genetic sequence which is the blueprint for the motor from Salmonella, then injected that sequence into E. Coli in order to have it make lots of copies of the motor. So they should already know the amino acid sequences involved, which should make it much easier to map the whole thing.
This prediction is by no means simple or straightforward, hence for many years we've had the computer program Folding At Home, which continues to run to this day even with incredible computing power applied to the protein folding problem/solutions, the solutions are still being calculated and found. There are seemingly near infinite possibilities.
8:05 A shame that Destin interrupted him here, but I found some research that explains the fascinating research: Bacteria moves in a run-and-tumble pattern. During a run, they go straight and the flagella and "motor" goes counterclockwise. During a tumble the bacteria tumbles and shifts direction. Now of course the tumble will be random, but you can still archive a route towards food with this randomness. What the bacteria does is that when it detects an increase in concentration of the food they have longer run periods so they will continue mostly in that direction, however when it detects a shift towards lower concentrations it does the opposite and increases tumble time to change direction. This will of course result in a sum movement towards the food. Amazing.
I feel he's always trying to impress whoever he's talking to with his own engineering knowledge, they are the experts just let them explain it.
@@gama1123He isn't trying to impress. He's trying to be active in the discussion and relate it to other things that viewers might be able to draw connections. There's not much point to him sitting there and having the person talking the entire time. You can watch lectures if you don't want dialogue.
@@ggs4989 ok
I understood that from the video... i dont remember if he interrupted but the information got to my head so i really dont think whatever he did stopped the communication of that idea at all. maybe you just didn't get it the way it was worded.
I think I understood what you just said from the video.
I love when two different subject matter experts get together and geek over each other’s discoveries/ inventions. It’s truly profound.
I don't love how he uses the word design instead of evolve.
@@phiiz3r we can do this, but let’s be civil.
Neo-Darwinism is unproven and not observable. The hypotheses have gone unproven and are near untestable. Logically then, how can you believe in the neodarwinist understanding of evolution with no evidence? Don’t confuse adaption with random mutation.
But I’m baffled how someone can look at a molecular two way motor made of amino acids that is perfectly designed and go, “yeah, intelligence didn’t create that.”
Furthermore It’s unwise to think science and theism (in my case Christianity) are at odds. Science is how we understand God’s creation. The pioneers of the scientific method did so with the belief that God created the universe in a way we can understand if we look hard enough.
The host is a smart guy and no doubt an SME in his field but he's not an SME in structural or evolutionary biology. He is a great explainer and did a good job of covering a lot of the salient information but nowhere close to an SME level of detail.
@@phiiz3r well… I did reply with a solid argument but RUclips blackholed my comment. Gotta love censorship.
@@phiiz3r Evolution is a design process, just not an intelligently directed one
Being a Patron is so awesome man! keep going at this pace!
Prashant's passion for his work is incredible, love to see how excited he is about discovering things.
Heck yeah, I'm glad we have academics working on stuff like this. I hope they are rewarded for the sake of the science, not because some company wants to monetize it, corrupting the otherwise natural process of continued discovery
I'm an experienced engineer and I think I understand how things work more or less well, but since I started studying microbiology, my mind has exploded! A new world has opened up, a world of ultra-efficient, super miniaturized and extremely complex machines!
But , it just happened by accident. 😂😂😂
@@Heracles_FE No. They happened by magic, r8?
@@itabiritomg Hi, biologist here. The machine analogy is used too much. Biological "machines" are thermodynamically driven. They aren't mechanical devices. That is - their movements are actually nothing but random thermal vibration of molecules, just biased in a specific way to make a consistent movement. For example - the gear protein that makes the flagellar motor move, doesn't do any gearing at all. It just supplies hydrogen ions to it in a specific direction.
Secondly, I want to emphasize that these 'mchines' aren't that efficient either. For example - flagellar motion works with
@@aniksamiurrahman6365 OK buddy , we couldn't build one that spins that fast smaller than a refrigerator, but you know , time and chance and all ... 🤡
@@aniksamiurrahman6365 When we say machine, we didn't strictly mean a rigid mechanism. A machine is just any device that can use energy to perform work in order to achieve a function. These flagellar motors certainly fit in that description and they are still extremely incredible and wonderful.
I have a PhD in Molecular and Cell Biology. Let me say this: you did an incredible job describing so many complex ideas. Simply amazing!
I am NOT a phd in anything including cell biology or molecules. I am but a lowly mechanical technician who just took a course on industrial electricity. What I am seeing here is a reversible electric motor complete with gears, races, shaft, bearings, variable speed transmission, and mated parts like rotors and stators that have to fit perfectly into each other for any of it to function. Come on. Surely this is a designed system. How on earth would these individual components be formed as part of other evolved systems in the precise measurements / dimensions required to somehow all be brought together all at once and create this functioning apparatus? I am not religious. I believe in evolution. I also have eyes and believe what I see and appear to be seeing a designed device. Has anybody identified the individual components and specified where they were created independently?
@@tyharris9994 Evolution is algorithm which best case solution spread to next generation trying to find what it's more advantageous using things already there. It's so powerful that computers scientists designed one of the most powerful AI algorithm, genetic algorithm. Biomimetics covers a lot of that and we could use more
@@tyharris9994 Billions and billions of years of trial and error, complex life forms did not emerge overnight. It seems to me that even very intelligent people often forget this fact.
@@tyharris9994That's exactly what evolution is. It takes so long and so, so, so many iterations of selection. Bacteria that developed prototype of with very weak of motility from random chance ends up surving much better than others, and ones that mutates a more updated version that works a bit better, survives a bit better and outcompetes it's older generation. These bacteria doubles like veery thirty minutes (in log phase) , and think of how long they have existed. This kind of bacteria has evolved from the first prototype of motility to what it has now, like a rocket from Mark 1 to Mark 6, it is Mark 1 to Mark whatever trillions for these bacteria. It is a long time and by chance and how it optimizes their survival in a harsh world out here.
Because it didn't start out that way. You're looking at version 50 trillion of it, and ignoring all the versions that led to its development and which were superceded by a better version that came later, outcompeted, and replaced it.
I’m just a dame from no Discipine whatsoever, but am excited about wrapping my head around concepts of which I have no knowledge. This conversation was done so well I could understand the beauty of this design, and the very idea you’ve found a MOTOR at the cellular level in a BACTERIA. Tiny mind blown.
“The implications for a bio mechanical motor are insane “
Every cell in my body right now converting ATP into ADP: Bruh…really?
My thought exactly!
fax
I suspect this guy's view of the physical world isn't based solely on science.
@@YouAreStillNotablaze Why would it be? It's impossible to operate based on facts alone.
well the motor thing converts ADP into ATP, but yes, every cell also converts ATP to ADP
The bacteria knows where it is, because it knows where it isn't
Underrated comment
It knows this because it knows where it isn't.
By subtractinf where it is from where it isn't or where it isn't from where it is, whichever is greater, it obtains a "difference" or "deviation".
Except it doesn't "know" anything. There is simply a stimulus from a direction that triggers a cascade of reactions to move towards or away from that.
Dithering is actually a great analogy for evolution. When the bacteria doesn't need to move (evolve) it stays relatively still. When it does need to move it moves in random direction. It is improbable that it would go back to the start, but there is no "forward".
😅
I'm a mechanical engineer and one of my best friends is a bio guy (he has like two Master's degrees and is pursuing a PhD--he's wicked smart). When we lived together he would oftentimes find papers of the mechanics of microorganisms and show me the kind of "engineering" that has already been used in biology. Really cool stuff
By an intelligent creator YHVH God.
@@AndrewFosterSheff69 except there no evidence of a creator and plenty evidence that contradicts the hypothesis of intelligent design in biology. Religion is toxic to humanity.
Lol my boy here is wicked smart. Sounds so cool in a Sothie accent
@@AndrewFosterSheff69 lol, no
@@AndrewFosterSheff69your God, right? Not that evil Allah guy
Congratulations on 300. Here's many more. God bless you 🙏🏾
Excuse me while I engineerify your biology.🤣
biology IS chemical engineering
*biomedical engineering
Wouldn't "his biology" be autobiological? Which would make SED's reason (aka MO) to do that a matter of... auto-motive engineerifying?
😂😂😂😂😂😂
Well, engineers are an outcome of evolution xD. Evolution has no limit on complexity. The only thing that matters for evolution is that it works reliably. If that's a super complex structure on top of another, fused with a third one, combine it with neural networks and many neural networks form a social structure together where ideas evolve to a point where engineering is born - then that's extremely hyper mega complex - but it works. And that's the *only* thing that matter for evolution.
I am a retired bio engineer. The lab that I worked in for over half of my 74 years studied the molecular structure of cardiac muscle cells. The contraction of these muscle cells is driven by gradients of several different ions, much like the flagellar motors. There are ion channels that open to allow ions to flow into the cell to cause contraction and then there are ion pumps that are used to re-establish the gradients to allow the cell to relax.
So my question is this, if these molecular motors are driven by the gradient of hydrogen ions, have the ion pumps, that must exist, been studied that regulate the ionic gradient? Thanks for a wonderful discussion!
Yes, the proton pump exist and involve in sooooo many cases like in your stomach to keep the pH at low level, and it has also been studied for decades 😉
20:30 He’s talking about photogrammetry!!! This process is AMAZING!!! Dustin, you got to make a video about this!!!!
This is really, really, well made. I with my engineering PhD and my parent with a theology degree were both able to understand this on a level that kept us interested, and we both had fun watching. Really amazing Desitin.
The thing is, calling a biomechanical motor “complicated” is strange based on everything else we know about life.
A brain is complicated. The immune system is complicsted. An entire organism working in unison is complicated. A little motor feels like the least wild thing about life.
Put another way, inventing the steam engine is pretty cool, but humanity being able to globally communicate, innovate, and utilize that steam engine is even more crazy. The steam engine is simple in comparison.
Exactly.. everything that have evolved over a billion yr is "complex" .. but that's after a billion yr of evolution. It's like coming to a built house and being amazed that such a thing could just exist.
We know the mechanisms of evolution.. it's not a mystery.
This is litteraly the argument of religious zealots in 2007, they used the flagella and the eye as evidence for a creator. It was called intelligent design and was debated to death on yt in 2007-08 between atheists and religious ppl... ppl may remember thunderfoot and venomfangx.
Agreed, but I suspect that Destin is a bit of a creationist/intelligent design believer, and they tend to have a certain way of perceiving things like this.
I agree with you, but I also want to point out that the fact that a biomechanical motor is "simple" in terms of nature's complexity is extremely awesome and telling.
@@phasmata3813 It's true. It makes me a bit sad. Like complexity exists everywhere. It only seems special here because you didn't expect it here, and there it is. So now this is the proof that god exists? I am not so sure
I think the interesting question is how you get there. There is a pretty obvious line from a single nerve connecting a sensor and a muscle over one more nerve next to it, to a whole bundle of nerves that make up a brain.
To stick to your analogy: Figuring out how to talk to your neighbor, organising into a group, figuring out how to talk to other groups - that's a relatively straight forward process. But putting together all the principles needed to make a steam engine at once is a whole different beast.
One of my favorite things is when Destin speaks with someone who is very knowledgeable and passionate, you can tell they want to geek out over the topic, but they question how smart this RUclipsr actually is. And then without fail in his videos, Destin will show how smart he is, and the expert perks up and the vibe of the video changes immediately.
Yes, that struck me too, how he quickly related the biased random walk of the bacteria to his own work on using biased dithering of the control fins to improve the accuracy of guided missiles. Then Prash had an 'Oh yes' moment. Prash also had an intuitive feel for how much detail the audience could handle. Nicely done by both guys.
Watch to the end. He demonstrates how indoctrinated and gullible he is.
@@JiveDadson Destin is the very much the opposite of gullible. He uses his knowledge and communication skills to breakdown complicated things and explains them to others so they can be knowledgeable as well. He urges people to think critically. If Destin wishes to think god created these things then so be it, I might not agree with him. But my opinion holds just as much weight as his does.
Destin very cleverly sort-of acts dumb and teases information out so the experts have to explain things so we ordinary mortals to understand (apologies any non-ordinary mortals reading this!).
I love this channel so much for one thing and that is the fact that Dustin understands whatever he is listening to and moreover understands the person who he is talking to on a higher level than most people and asks the right question in the right way. Thank you Dustin for your videos which always opens up the viewer something to learn. ❤❤
Totally agree! He always builds a nice bridge toward understanding the concepts being discussed. (It's Destin, by the way 😉)
A higher understanding that leads to intelligent design?
Thank you for making this video Destin! I really appreciate your insight and passion for this topic.
As an airline pilot, I had a guest in the flight deck one day (back when we could do that) who was a molecular biologist researcher at a local university. He expressed wonder at the complexities of our flight deck and aircraft. I remarked that what he worked on every day must be a thousand times more complex! We were both in wonder and awe of these things that we humans (in the case of an aircraft) and ??? (you fill in the blank) have made in the cellular structures!! I love your encouragement here to "Not defend a flag," but just look and ponder!... Thanks for all this - it is so absolutely amazing!
The first time I saw the flagellar motor I was staggered - i have never forgotten it. Later I stumbled onto an animation of kinesin protein walking on a micro-tubule and was just as floored. The molecular machinery of life is mind blowing and I LOVE IT :D
Both are miraculous!
It's designed. There is no explanation that random mutations could have created it
@@kenfryer2090 Yep. A great example of irreducible complexity (Michael Behe). It has more than 30 necessary parts, and doesn't work at all without any one of them. The odds of that forming by random are so astronomical that finding one specific atom in the universe would look simple by comparison.
@@kenfryer2090 this is fully explained without the use of magic. There are numerous papers detailing it including one Destin himself posted here.
@@daveduncan2748 irreducible complexity has never been demonstrated and Behe is a conman. Evolution by natural selection is not random.
Should have called the second channel, “Smarter Every Other Day”.
Or "Smarter Than Yesterday"
Smarter Every Night
Smarterer Every Day
Even Smarter Every Day
Smarter Every Day except the Sabbath
You man are by far the smartest youtuber around, no ignorance about admitted.
The number of biologists in the comment section is already considerable! But I have to say that as a microbiologist, I find Destin's excitement and surprise about the elegance of biological systems so heartwarming and satisfying!
Texts video to buddy. Buddy: “Oh, Destin is into crochet. Good for him.”
Crochet was the first thing that popped into my head!
The fact that I'm even here watching RUclips through a computer screen is mind-blowing.
Most underrated comment.
It's amazing, no doubt. But biology is far, far more complex.
Computer science is my area of interest. I would be inclined to say that computer science is complex enough to compete with biology. We could just agree that computer science and Biology are both very complex and we don't need a winner.
@@hannahwells9397 That's a hard no. I'm a medical-geneticist who fell into an IT/software career ... the two do not even compare.
@@hannahwells9397 Imagination allows for much more than real life experience, but reality is real while fantasy and virtuality aren't. Even ignoring this disparity we're nowhere near to create a virtual organism that could compete in complexity with a single cell, let alone a whole animal.
If you think I'm wrong, please give an example that I may not know of.
What a wonderful thing you are doing! I am a teacher retired from public school teaching and currently teaching part time in a Christian school. My subject is STEM… Science, Technology, Engineering and Mathematics. I’m so glad to have your content to help me find ways to make connections for my students between the STEM subjects and God. Beautiful! Joyful! Thank you so much!
"A motor made out of molecules." -- I'd be more impressed by a motor that WASN'T made out of molecules.
A correct way of putting it will be "A motor made out of proteins"
Metal isn't made out of molecules, it's made out of atoms stripped from their valence electrons and a shared cloud of electrons. So no molecules there.
@@yys6102 molecular-scale motor
I would be more impressed if the bacteria didn't have any way of locomotion but it would still move around. You know, like by invisible magic, in a supernatural way. Now it's just same old physical thing like all other methods of locomotion and movement are too.
@@capricornuss True, but it would be hard to make a motor with no molecular content. Even discounting various parts and lubrication, the fuel is molecular. Even if you powered it with a non-molecular fuel, the oxidizer would be molecular O2. You'd have to find a complete fuel made entirely of somewhat-stable singlets.
Prashant seems like such an awesome person. Thanks for doing this interview, inviting him to share the fascinating science that he apparently gets so much satisfaction by advancing.
I ❤ listening to scientists like this; it's a unique joy of being human.
Everyone: Going off about how cool the flagellar motor is.
ATP Synthase: Am I a joke to you?!?!?
Micro-tubules inside neurons using quantum entanglement to transfer information are cooly filing their nails and looking unimpressed.
@@tyharris9994
That is not supported by evidence. It is pure speculation and since entanglement is short term even at near zero K it is simply not likely. Microtubules have a real know function. Structural. I am sorry but it is exceedingly like that Dr Penrose is wrong on this.
It's also interesting how that motor uses photons too
Thank you Destin! Big love!
I remember my AP bio teacher back in high school casually mention "proton pumps" in class one day and having the same kind of "wait, WHAT?" reaction.
yes, I remember a very similar structure that is in your stomach cells that is used to make the acid in your stomach. There probably are many similar mechanisms in various cells, nothing unique here.
What's even crazier is that just like the doubled walled bacteria in the video, the mitochondria (Powerhouse of the Cell!) in our cells have doubles walls and utilize proton pumps to create a gradient. That gradient is how they recharge ADP into ATP, the "batteries" that power all cellular functions.
They may seem 'sciency' but they're incredibly commonplace. If you taste something sour, that's protons.
Just learned about ATP and proton gradient last week. And now this. Animation helps for sure. We are not just machines, we are fantastic machines.
@@philm7758 that is actually a well-accepted hypothesis on evolution: organisms with mitochondria came to be by "swallowing" organisms which were the ancestors of these bacteria, and then, by chance, they did not digested it and instead both organisms integrated themselves together, then evolved together by natural selection, and the inner organism lost its independence but gained a safe environment. This also explains why mitochondria have their own DNA separated from the host cells. In humans, mitochondrial DNA comes only from the mother. This fact was used to map the DNA of the people in my country and prove the hypothesis that none of the first mothers of my people were white (in other words, the obvious: the ships of the Portuguese and Spanish explorers had no women)
The first 5 minutes of this video alone are mind blowing. Prashant is clearly a smart guy but the engineering translation you provided really helped me see how that all works. Awesome video!!
I stumbled upon those motors around 1996: there was a small section about them in the university textbook Brock´s _Biology of Microorganisms_ . To this day I remember the drawing of the motor components, very similar but not as detailed as those shown in the video. I was amazed upon learning about the flagellar motors, but even more amazed because the general public and the media seem to ignore them completely.
Another interesting fact: The proteins that made up the flagellum are produced inside the cell and "pumped" through the motor hollow core; then they self-assemble to build the flagellum, which is a hollow and flexible tube that grows up from its tip.
I have enjoyed very much this video showing the current status of science knowledge about this topic.
Actually, this mechanism isn't ignored, it was a key part on banning intelligent design from public schools
@@pedro4205huh?
So what you're saying is that flagella are rotating self assembling inflatable tubemen? Fascinating!
great explaination, love it
@@emonvidaly Kitzmiller v. Dover Area School District. Basically some clowns in a school district wanted to teach intelligent design and brought forward flagellar motors, then proceeded to get destroyed so thoroughly that they resorted to one of their favorite tactics: death threats, before basically giving up and paying about 1 million in legal fees.
This is a great video. There is a creator and we're barely scratching the surface of His engineering abilities. God bless you all!
"Oh yes, this is the best part!" Gotta love that kind of drive, to be excited about months of meticulous matching and analyzing because it means answers and discovery.
Prashant Singh was really fun to listen to, cool guy!
Also, you're awesome Destin, thank you!
I heard about this from that intelligent design vs evolution court case.. The intelligent design people were arguing it had to be designed because of how intricately dependent every individual part is on each other, so if you remove a single part it completely stops working. But the evolution side showed that similar structures with missing parts were also being used by bacteria, except for completely different purposes. It's like the mouse trap example - if even a single part is removed it no longer functions as a mouse trap, but you only need 2-3 of the original parts for it to still work as a tie clip
Kitzmiller v. Dover Area School District is the name of the case
Part of the argument that's intelligent design used against Evolution was that several of the parts that make up this motor are not found in any other living creature therefore it's not like a hair becoming a feather. Furthermore the development of this motor is from the inside out and that also makes it extremely improbable then this little motor evolved.
The view to see the cell as a machine with parts that have single functions is also an oversimplification. There are many proteins that are not solid, have different shapes and many different functions in a cell. Which in my opinion makes it even a bigger of a mystery how all these interesting things can emerge out of jiggly strings and blobs made of amino acids. I like your story above, however I think it just makes sense of where the single parts (proteins) might have come from. Not how the organism came to be and how it can function.
@@LarryStonster Hairs never became feathers. Feathers are an adaption of the process that creates scales.
Creationists have argued that tons of structures were irreducibly complex and for almost all of them we have found them to be plenty complex but highly reducable.
Feather ironically being one of them.
It's just god of the gaps with a more scientifically interesting gap.
@@LarryStonster they are found all over. It's a lie, both in modern evo terms and in sub-components of other parts in the cell walls.
The energy, zeal, and childlike joy and curiosity Destin has in this video is so infectious I can't stop smiling myself throughout this video. Thanks for educating us about flagellar motors!
You said something wrong at 22:08.
It is not the shapes of amino acids that make the shapes of proteins,
Rather it is the electrical attraction and repulsion between amino-acids in a chain of polypeptides that make it fold into its final shape.
Amino acids bundle up into peptides.
A strand of DNA is transcribed to a strand of RNA, which is then translated to a strand of peptides ( a.k.a. polypeptide)
Due to the form atoms try to share electrons to make bonds, ions are then formed.
The attraction and repulsion between these ions make the strand of polypeptides twist and turn to minimize energy.
This string of peptides, suffers folding due to internal forces.
The result is a 3d shaped protein.
@@MrJaffjunior it's not completely wrong. The thing is that we still don't know how exactly the protein folds. Principally we know, but not in great detail.
I second this. Also I thought this was widely known over 5 years ago. I'm confused
@@advidshopper and the 22:08 didn't explain protein folding, it explained how to map protein density with amino acids. Yes, that's been known for a long time.
“attraction and repulsion between the ions” is the closest I’ve ever gotten to understanding the shape of peptides…. Ty!
@@adebicara which I should add is the emphasis of the video that mechanical movement on the micron scale draws similarities to prenanovision motion design. Evolution over long time is extremely underrated. It beat human designers hundreds of millions of years ago.
9:36 I remember learning about the "Blob" in my microbiology course in college back in '81! We knew at the time there was this barrel-like structure of globular proteins that rotated and caused the flagellum to turn, allowing the bacterium to move. We certainly did not have the amazing level of detail the good Dr. is showing. Simply amazing!
Imagine being Destin's great-grandchild. You've heard loads about great-granpappy, but different from prior generations, you actually have access to 300+ videos of him sharing his enthusiasm for the world. Isn't this a great time to be alive?
The best thing is that as a great-grandchild of someone, you'll soon typically even be able to find a _reincarnation_ of such an ancestor who already is again alive.
minus the fallacious agrgument for god this is probably true
@@JK-gm1ek Agree completely. He came so close to saying "irreducible complexity" I could almost see ProfessorDaveExplains's spider-sense tingling
Christian here... I love your invitation to not "defend a flag". I used to do that (guess what flag I defended) and I ended up creating such a small world for myself to live in. Now I live by curiosity, not needing to have an answer about intelligent design vs evolution (why does it even have to be a 'vs') and I experience the same sort of joy and wonder you're talking about. Life is much grander and more exciting now.
Lovely to see Prash smile when Destin interrupts to ask a clarifying question and make engineering analogies.
Two boys at heart learning from each other. It's so fun.
I dropped in on a university class on molecular cell biology once and it blew my mind. I hadn't taken biology in high school, so everything was new. I had no idea all protein interactions could be seen as mechanical engineering. It still seems like the most wonderful thing; and how terrific we live in an age where these mysteries are being uncovered and explained.
Very glad to see this video. The molecular machines inside our cells are absolutely mind-blowing.
Don't mention the word mind, the naturalists heads will explode lol.
@@WaterspoutsOfTheDeepDon't mention the word head, creationists dont have one.
@@abel3557 My statement is based in reason and science unlike yours. Naturalism cannot account for a rational mind. In other words produce it since you need everything spoon fed to you. Reminder of your history, creationists specifically Christians gave you universities, scientific method, modern science, took mysticism out of science and much more.
@@abel3557 My statement is based in reason and science unlike yours. Naturalism cannot account for a rational mind hence my comment you couldn't grasp.
@@WaterspoutsOfTheDeep Your statement is based on falsehood and willful ignorance.
There is no other explanation that has evidence backing it that explains the complexity of life besides Evolutionary biology as well as the chemistry and physics involved.
Smarter Every Day is just another puppet that tried to pry in creationist propaganda into his video, despite there being many scientific papers already explaining the questions he has. It is the true nature of a theist, a hot glued veil of blind faith. Dogma controls his life, just as it does to you.
I became smarter today. Wow I wish I was a scientist. Prash seemed so passionate about his job. There is do much that nature can show us if, instead of coming up with new things like harmful plastics, we instead, use the gifts our creator made for us. 🎉❤
It is fascinating to me that we as humans have created technology that mimics biology before knowing the biology
@@bmangold83 but it has happened though?
@@lazyaz2750 It sure has. The next question then is an endogenous or exogenous explanation more probable?
@@lazyaz2750 Shh, he has a flag and it's firmly planted. Also, we may need a source on that claim he makes.
Because we have a physical universe that has problems in it.
Biological life has been working at the exact same problems as humans humans can make improvements over their lifetime. Cells have to work on the problems through mutation and selection.
Both of us have stumbled into the same answer "on how to move in water". Just one of us did this billions of years ago.
Fascinating to me as well that humanity has mimicked this! The question for me now is, what's the next piece of technology that nature's utilized for who knows how many years, millennia, or megaannum that we've only recently learned/built/utilized or just mimicked in the last few hundred years or so... We're the newbs...
Watching a biologist and an engineer get excited over the same bit of research together is weirdly wholesome
What is biology if not machinery?
"The bacteria knows where it is at all times because it knows where it isnt" is all Destin needed to say to complete the missile analogy.