How to calculate tandem duplication and segemtnal duplication. I mean is there any. method which can tell us that the dupkicatwd genes had segmemtal or tandem. duplication.
bro how did you make phylogenetic tree? did you use only CDS sequences from one genome only?? which method did you use for phylogenetic tree? can you please guide
I have 12 pairs of genes(total 24) but when i do analysis through tbtool... only 2 gene pair appears and their kaks ratio ... Why remaining pairs are not showing?
Great to hear from you. Dr. Your efforts are amazing.
Thanks for appreciation and comment
please keep on uploading such videos. Really grateful to you.
Your comment means a lot
Great. video. very well explained.
Glad you enjoyed it!
Can you please recommend any papers in which the methodology for calculating ka/ks values using a phylogenetic tree has been explained?
Thank you sir...again you save me..
Always welcome
how did you use different genes in mega tree?? how did you make an alignme
nt?
If you follow the series genome wide analysis 2024, you will get the answer of all your queries.
Any how for alignment, find and watch the video with keywords "Protein sequence alignment genome wide study"
Any how for mega tree, find and watch the video with keywords "Phylogenetic tree genome wide study"
I have 13 protein coding genes for one genome. How can i do that?? should i take sequences from references or not?
No need to take sequence from reference. Use CDS seq and follow the video steps
How to calculate tandem duplication and segemtnal duplication. I mean is there any. method which can tell us that the dupkicatwd genes had segmemtal or tandem. duplication.
bro how did you make phylogenetic tree? did you use only CDS sequences from one genome only?? which method did you use for phylogenetic tree? can you please guide
Please follow the whole video
Used CDS seq
@genomewidestudy bro can you please share your Gmail I need help regarding it
I have 12 pairs of genes(total 24) but when i do analysis through tbtool... only 2 gene pair appears and their kaks ratio ... Why remaining pairs are not showing?
May be there Seq doesn't match or follow the algorithm
Algorithm ??
Why my ka ks are coming as NaN ?
Check input data
How to cite this? Please inform us
you can cite the tbtool. the citation is also available when you open the tbtool