PAML Codeml # phylogenetic analyses of DNA using maximum likelihood

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  • Опубликовано: 8 ноя 2024

Комментарии • 30

  • @DrSabirHussainShahAssttProfess
    @DrSabirHussainShahAssttProfess 3 года назад +3

    Well explained. It will be very helpful for the scholars. You have done a great job.

  • @Gbemi78
    @Gbemi78 3 года назад +2

    your videos are top-notch and thoroughly explained. Please keep uploading more because these videos are saving lives

  • @banishaphukela151
    @banishaphukela151 10 месяцев назад +1

    Hi...Could you please elaborate how you installed CODEML program of PAML package on your system?

  • @kashishkamra4667
    @kashishkamra4667 Год назад +1

    ,
    Thanks alot You have been doing amazing job
    Wish you the best 🙌🏻

  • @mahakhan4468
    @mahakhan4468 3 года назад

    Wel explained good job dr sahib

  • @lensong8399
    @lensong8399 Год назад +1

    Thanks for the tutorial. Could you post the references of the tables you introduced at the beginning of the video?

    • @genomewidestudy
      @genomewidestudy  Год назад

      I am trying to find it out but there are lot of papers have different was of their data presentation. What You want? I can help you.

  • @zainularifeen4158
    @zainularifeen4158 2 года назад +1

    May I ask that why you always remove the stop codon from the CDs?

  • @shiveelirajput7462
    @shiveelirajput7462 3 года назад

    Thank you for this video. You have explained everything nicely and thoroughly. I had been looking for this video for a long and it is really helpful. You are doing great work, sir. Looking forward to more such videos.

  • @sarahpajuelo6634
    @sarahpajuelo6634 2 года назад +2

    I have a question.. Did you make any modification of the codeml.ctl? Thanks a lot!

    • @genomewidestudy
      @genomewidestudy  2 года назад

      Any change I made, is shown in the video..

    • @sarahpajuelo6634
      @sarahpajuelo6634 2 года назад

      @@genomewidestudy Thank you for responding, in what paper are those tables you show in your presentation?

  • @wangyuhong710
    @wangyuhong710 Год назад

    Hi, thanks for your vedio, it is really helpful. My codeml.ctl only have M0 model, could you share your CTL file?

    • @genomewidestudy
      @genomewidestudy  Год назад

      Why only M0, it gives all the Models. wait till the analysis complete

  • @debaratinandi144
    @debaratinandi144 3 года назад +3

    can you make one video on gene ontology?? Reply please..

    • @genomewidestudy
      @genomewidestudy  6 месяцев назад

      Uploaded number of videos on GO and KEGG

  • @Etchaa
    @Etchaa Месяц назад +1

    Can you please share with me the CTL file used in this study please?

  • @mane_gnona
    @mane_gnona 3 года назад +2

    What version of PALM do you i have ? I am on MacOS and I downloaded palm 4.9 (the latest version) and my directory looks different

  • @MuriloDantasdeMedeiros
    @MuriloDantasdeMedeiros Год назад

    how I do to install the paml and codeml on windows?

  • @arvindsharmaphd
    @arvindsharmaphd Год назад +1

    can you provide the input and control files you used in the tutorial

  • @hebaabdalla4482
    @hebaabdalla4482 2 года назад

    thanks for your video and i need help here if i work in two species with 9 gene set who i write genes in first place for detect ds/dn
    thanks in advance

    • @genomewidestudy
      @genomewidestudy  2 года назад

      Everyone have their own way of presentation. you can write 2 in number of species column and 9 in num of seq column.