Capturing Neutrophils with Loupe Browser
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- Опубликовано: 6 авг 2024
- In this video, we will use the Loupe Browser software to identify the neutrophil population in the data. We use as input the cloupe file which is produced by the Cell Ranger software. Within Loupe Browser we will use annotation and reclustering features to better understand the cell populations in this PBMC dataset. The tutorial is also available on this page: 10xgen.com/3ZlFw7j
0:00 Welcome
0:52 Files Required for Tutorial
2:05 Loupe Browser Intro
3:30 Import Annotation List
4:15 Cell Type Annotation
7:30 Reclustering
16:30 Differential Gene Expression Analysis
18:40 Bonus: Neutrophils Sub-type Exploration
21:00 Bonus: Export Projection - Наука
Great tutorial. I do have a quick question here, I have a gene of interest, how do you find what cell type express this gene of interest in loupe browser?