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These scripts are available at Modeller website. We have customized the scripts and they are available in our course at Udemy Bioinformatics: Learn Docking and MD Simulation from Scratch.
hello sir, I have a query:- I have a protein PDB ID 4HJO. in it the residues are missing in the begining, in the midlle region and at the end how to make changes in the script 3 so as to execute it w ithout any error, please help as I am stuck with it ? thank you
Dear Altaf Ahmad Shah, many thanks for watching our videos. Please do not worry for the residues that are missing at the start and end. You just need to focus on the middle one. Hope it will help you out
Dear Altaf, Im trying to do this tutorial but I cant find the cripts and the comment section is not helping. Could you please share the script files or tell me where can I get them? Is it on the Udemy course?
Such a great teacher I have ever seen in my life...thank u soo much sir for teaching us in this way, such an outstanding way of teaching. May Allah always bless u 💟 appreciated 👏👏
First if you make a tutorial you should keep your scripts accessible and don't hide them. Second, all of these steps can be done automatically in chimera.
Hi sir Mohammed, that's true and one main problem with is that after inspection of the model structure you notice a change in the amino acid residues like they have been replaced by other amino acides.
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DO YOU WANT TO LEARN BIOINFORMATICS, DOCKING AND MD SIMULATION FROM SCRATCH THEN THESE TWO COURSES ARE FOR YOU. COME AND JOIN US. WE ARE LOOKING FORWARD TO YOU.
WE ASSURE YOU TO PROVIDE THE BEST POSSIBLE SUPPORT USING Q&A IN 7 DAYS A WEEK. SO GUYS HURRY UP TO GET THE COURSE AT DISCOUNTED RATES.
IF YOU WANT TO LEARN BIOINFORMATICS THEN TAKE OUR COURSE
COURSE LINK: HTTPS://BIT.LY/2SFH0FZ
LEARN DOCKING AND MD SIMULATION IN DETAIL THEN PLEASE JOIN OUR COURSE JUST CLICK BELOW COURSE LINK: HTTPS://BIT.LY/3YFQL3A
can you please put applied scripts for us here or tell us where we can get these essential scripts to repair the sequence?
from where i can the script files?
These scripts are available at Modeller website. We have customized the scripts and they are available in our course at Udemy Bioinformatics: Learn Docking and MD Simulation from Scratch.
what are the name of scripts?
How Can I find?
Am wondering , cant the descovery stodio fix it all with clean geometry option ?!
To some extent yes, but Modeller is considered gold standard so far.
My protein has missing atoms in some of the residues instead of whole residues can this fix that ?
hello sir, I have a query:- I have a protein PDB ID 4HJO. in it the residues are missing in the begining, in the midlle region and at the end how to make changes in the script 3 so as to execute it w ithout any error, please help as I am stuck with it ? thank you
Dear Altaf Ahmad Shah, many thanks for watching our videos. Please do not worry for the residues that are missing at the start and end. You just need to focus on the middle one. Hope it will help you out
Dear Altaf, Im trying to do this tutorial but I cant find the cripts and the comment section is not helping. Could you please share the script files or tell me where can I get them? Is it on the Udemy course?
@@dennisag4936 drop your mail here i will send the link. else you can find the scripts given in Modeller tutorial link site
Such a great teacher I have ever seen in my life...thank u soo much sir for teaching us in this way, such an outstanding way of teaching. May Allah always bless u 💟 appreciated 👏👏
Many thanks Shanza
First if you make a tutorial you should keep your scripts accessible and don't hide them. Second, all of these steps can be done automatically in chimera.
Hi sir Mohammed, that's true and one main problem with is that after inspection of the model structure you notice a change in the amino acid residues like they have been replaced by other amino acides.
I agree and apologise for not providing scripts
Hi! Do you have a tutorial for doing this automatically in chimera? Thanks!
@@carolinesargent2998 I will post this as soon as I have time
what to do if plenty of molecules is missing in the middile of the sequence it self ?
you can fix them all easily using described methodology in video
Please like share and subscribe to our channel
Do we have to use these same scripts for all proteins??
Yes
where to get these 3 script template files?
Please visit the Modeller website. You can find all scripts there.
can you provide the direct links@@bioinfoxpert
Thanks for uploading this video. Can you please share python scripts 1, 2 and 3 used in this video?
Hi, Hope you have enjoyed our Bioinformatics videos. Now DataScience & Bioinformatics Team is inviting you to attend an Excellent Course to Learn Complete Bioinformatics from Scratch on Discounted Prince. After taking this course, you will be very confident and we ASSURE YOU THAT THIS GAME CHANGER FOR YOU.
There are details about the Theory and Practical of
Homology Modeling
Threading, 3D Structure Prediction
Evolutionary Bioinformatics
Gene Predictions
Database Searching
Alignment
Docking
and everything you can expect. So what are you waiting for? Please click below to get the course at a discounted price.
www.udemy.com/course/learn-bioinformatics/?referralCode=35C6DA89E7B61CA56DCC
salilab.org/modeller/wiki/Missing_residues
Can you please share python scripts 1, 2 and 3 used in this video?
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Nice explanation, how can we fill missing residues of a protein containing two or more chains ?
salilab.org/modeller/wiki/Missing_residues
Yes you can
Simple and excellent
Hi, Hope you have enjoyed our Bioinformatics videos. Now DataScience & Bioinformatics Team is inviting you to attend an Excellent Course to Learn Complete Bioinformatics from Scratch on Discounted Prince. After taking this course, you will be very confident and we ASSURE YOU THAT THIS GAME CHANGER FOR YOU.
There are details about the Theory and Practical of
Homology Modeling
Threading, 3D Structure Prediction
Evolutionary Bioinformatics
Gene Predictions
Database Searching
Alignment
Docking
and everything you can expect. So what are you waiting for? Please click below to get the course at a discounted price.
www.udemy.com/course/learn-bioinformatics/?referralCode=35C6DA89E7B61CA56DCC
need the scripts
Upload all the script files which is used in this video fast
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(www.udemy.com/course/learn-bioinformatics/?referralCode=35C6DA89E7B61CA56DCC)
(2) Learn Docking and Molecular Dynamics Simulation From Scratch
(www.udemy.com/course/bioinformatics_advance/?referralCode=E0E70A2ABEDEEB5F3D68)Click Below To Get Two Best Seller Courses To Learn Bioinformatics From Zero
Hi, Hope you have enjoyed our Bioinformatics videos. Now DataScience & Bioinformatics Team is inviting you to attend an Excellent Course to Learn Complete Bioinformatics from Scratch on Discounted Prince. After taking this course, you will be very confident and we ASSURE YOU THAT THIS GAME CHANGER FOR YOU.
There are details about the Theory and Practical of
Homology Modeling
Threading, 3D Structure Prediction
Evolutionary Bioinformatics
Gene Predictions
Database Searching
Alignment
Docking
and everything you can expect. So what are you waiting for? Please click below to get the course at a discounted price.
www.udemy.com/course/learn-bioinformatics/?referralCode=35C6DA89E7B61CA56DCC