Bioinformatics Tips & Tricks: Development Tools Setup

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  • Опубликовано: 27 окт 2024

Комментарии • 24

  • @LumTheAlien
    @LumTheAlien Год назад

    Thank you for making this video, I have been wanting to start using Visual Studio. So far, I have only used PyCharm. I am very much a beginner with programming so help with set up is very much appreciated.

  • @mariaromero7459
    @mariaromero7459 4 года назад +1

    Great video, thanks!

  • @macielrodriguez6697
    @macielrodriguez6697 2 года назад

    Hi!! Thanks for such an excellent video!!! I followed your instructions and I was able to install everything with the exception of the python linter. But i think that's more related to the extensions available right now.
    A question please! What theme do you use? It is pretty nice and the variables inside the curly brackets in the f strings are in another color, which is something I like very much!!

    • @rebelScience
      @rebelScience  2 года назад

      Sorry for the delay. You should join Telegram or Matrix community and ask there. I will share some configuration settings and theme settings there.

  • @drewmitchell8029
    @drewmitchell8029 3 года назад

    First time using VSCodium and I'm having some trouble getting the print function to operate properly. I've downloaded/installed all recommended extensions, but Print("Test") refuses to print for reasons unknown to me. I'm fairly new to Python in general, so it may be something obvious, but I'm at a loss. Any help would be appreciated. I'm not getting any errors and my output looks identical to yours, only no printed text. Also, your channel is great and I'm looking forward to diving in once I get things up and running correctly! Thanks!

    • @rebelScience
      @rebelScience  3 года назад

      We would need to know more. What OS are you on? Did you install the latest Python? I suggest joining our chat to see if someone can help.

    • @drewmitchell8029
      @drewmitchell8029 3 года назад

      @@rebelScience I'm on Windows, running version 3.9.4. I can literally copy/paste my code into Glowscript and it runs fine, but doesn't like something about my setup in codium. I'll try the chat. Thanks my friend

  • @kamshwuchin6907
    @kamshwuchin6907 3 года назад +1

    thanks !!!

  • @VJBILL1
    @VJBILL1 3 года назад

    Hello, thank you for creating such an informative video. However, after installing Vscodium, I can't install the extensions because Vscodium cannot connect to the extensions marketplace. Can you provide me with some guidance on why that may be the case? I've installed Vscodium via Scoop on my Surface Pro 7 (Windows 10 of course). Thanks

  • @kareemtaher7439
    @kareemtaher7439 4 года назад +1

    Great work sir
    But i cant install the studio
    and maybe the problem from my pc
    So i want to know your recommend for the best laptop for bioinformatics work
    Thanks.

    • @rebelScience
      @rebelScience  4 года назад +2

      Hi! Would you mind joining our of our chats in Telegram or Matrix and share a bit more information, like what Operating system you have and what version. How exactly does your Visual Studio Code installation fails? Maybe provide some screenshots. We can help!
      About a laptop for Bioinformatics: you don't really need a super powerful computer for that at all, especially if you are just starting. I have an old used Laptop with Dual-Core Intel CPU, 4 GB Ram, that costs $20 US, and I have a light version of Linux on It is super fast an enough to program in Python or any other programming language.

    • @TheFunkogolik
      @TheFunkogolik 4 года назад

      @@rebelScience really? 20 dollars only?

    • @TheFunkogolik
      @TheFunkogolik 4 года назад +1

      Thanks usefull video

    • @kareemtaher7439
      @kareemtaher7439 4 года назад +1

      Thank you for reply i appreciate that

    • @rebelScience
      @rebelScience  4 года назад +1

      eBay has bidding like that were, for example, this laptop has 6 hours left and can be purchased for around $30: ebay.to/2TItqoi and it is old i7, 8GB. So you can get a good laptop for dirt-cheap with bidding. I did just that. If you are medium-advanced level and you are using Machine Learning, Tensorflow, Pytourch, you might want a gaming laptop, but if you are working at that huge level of data, you probably have/can get an access to dedicated cloud to do heavy calculations. To be able to program algorithms and apply some basic data to them, you don't need anything amazing. I do most of my Bioinformatics on a cheap i5 with 8GB ram. Again, if you are working with datasets that are gigabytes in size, you are on a totally different scale/level.

  • @Ojaswini-Pathak
    @Ojaswini-Pathak 3 года назад +1

    Hi, thanks for making this very informative video. I wand to download VS Codium for windows but not sure which link to click in the github. Can you please elaborate on that.

    • @rebelScience
      @rebelScience  3 года назад

      You want this installer github.com/VSCodium/vscodium/releases/download/1.51.1/VSCodiumSetup-x64-1.51.1.exe it will also update automatically for you in the future.

    • @Ojaswini-Pathak
      @Ojaswini-Pathak 3 года назад

      @@rebelScience thanks so much

    • @Ojaswini-Pathak
      @Ojaswini-Pathak 3 года назад +1

      @@rebelScience Hi once again and sorry for bothering with another silly question. So I installed VS codium and trying to run basic print command with no output printed with following -> [Done] exited with code=0 in 0.096 seconds. I can run my code in command prompt though. Could you please help, am completely new to coding. I did my masters in biotechnology. Tried to join the group on telegram but got kicked out for some reason.

    • @rebelScience
      @rebelScience  3 года назад

      1. I would need a bit more details from you. How exactly are you running your code in VSCodium Editor? Did you install Code Runner extensions I show in my video?
      2. In telegram, we have a SPAM protection system. When you join, you are automatically asked a question like: (3 + 5). You just have to solve this and reply in the main chat by typing the answer: 8

    • @Ojaswini-Pathak
      @Ojaswini-Pathak 3 года назад +1

      @@rebelScience Thanks for your valuable time.
      Yes, I did download Python, code runner and Linter extensions. I get the following output for - print("Hello World")
      [Running] python -u "c:\Users\ojasw\Desktop\test.py"
      [Done] exited with code=0 in 0.18 seconds
      I tried trouble shooting from various intenet searches.
      The message from Shieldy (SPAM protection I guess) was kind of bewildering. It said solve the assignment in particular time or else you will be kicked out :-). Will try again.