Hi. If I have a protein dataset in fasta file and I wanted to filter them to fish out specific sequences that satisfies few characteristics, how should I do?
Interesting question! I think it’s possible using conditionals. You can check out my codon search video. That might give you some idea. I will have a look as well. Thanks for the idea.
sir I have tried a lot but Bio.Seq is not importing. I've checked biopython installation, and it says satisfied. but still I'm not getting it. help me out
Print (dna) has shown result But print (dna.complement) is not showing any result and any other command is not working. I'm new in this biopython learning. Please help me out
You probably haven't imported biopython properly in your work environment. You can check out the documentation. Print(dna) is working fine, that means its just taking the normal python syntax.
Hii sir, after the completion of biopython courses, what are the companies will going to hire and which companies will hire either IT companies or Pharma companies.
Bio python is already installed. We can call in any module from that. If you have a separate script in your system for biopython, then you can call in that script and use the modules in it
You don't need biopython to download a fasta file. You can directly go to ncbi or pdb, search for your protein or gene and download the sequence from there.
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OMG, im tried to find this about 3 hours
Thank u
very useful! keep making such informational videos! Thanksss!!!
Thank you. Do share my content
Amazing. Thanks for your help and knowledge Bro
You're welcome
Thanks a lot sir. This was very helpful.
Thank you, I am new and the video was really helpful
I am glad it could help
Thank you very much because this is something I can't learn from Chinese video websites
Hi. If I have a protein dataset in fasta file and I wanted to filter them to fish out specific sequences that satisfies few characteristics, how should I do?
Interesting question! I think it’s possible using conditionals. You can check out my codon search video. That might give you some idea. I will have a look as well.
Thanks for the idea.
@@akashmitrabiology Thanks. Using conditional helps!
sir I have tried a lot but Bio.Seq is not importing. I've checked biopython installation, and it says satisfied. but still I'm not getting it. help me out
You can reinstall biopython once more from scratch. Normally it should import. Check the codes that you're writing once more.
@@akashmitrabiology yes it worked. Problem was with my pycharm!
Good work Akash 👍
Thank you so much
hey Akash!!!!! I am using Jupyter to run codes of Biopython. I am not able to do the same in Visual studio code. Kindly guide me for the same
Try installing Biopython from the command line inside VS code. That should work I guess.
Print (dna) has shown result
But print (dna.complement) is not showing any result and any other command is not working. I'm new in this biopython learning. Please help me out
You probably haven't imported biopython properly in your work environment. You can check out the documentation. Print(dna) is working fine, that means its just taking the normal python syntax.
What version of python should I install for the biopython
The latest one
Hii sir, after the completion of biopython courses, what are the companies will going to hire and which companies will hire either IT companies or Pharma companies.
Depends on needs of the company
Hi is it possible to get some help on how to insert SNPs in a wild type DNA sequence using biopython?
I will look into it and let you know. You can explore the biopython documentation as well
Please I want to know. Why did you use
Import Bio.Seq instead of biopython where the folder generally is
Bio python is already installed. We can call in any module from that. If you have a separate script in your system for biopython, then you can call in that script and use the modules in it
i can't import Bio.Seq, why?
already installed biopyhton
tried already in multiple folders
this only happens within the py file in visual studio code
the term import in not recognized. I already tried with scripts\activate and deactivated
You can check the spellings and everything once more
@@akashmitrabiology I guess i was missing the prior selection of python interpreter
@@miguelresendes3749 Okay. Good that you could debug it.
Hi i m completely new to this platform. Can i learn bio python from this playlist? I have no prior knowledge about coding
Hi @pratiti. I have tried to simplify the tutorials as much as possible. You can give it a shot.
how to download a fasta file?
You don't need biopython to download a fasta file. You can directly go to ncbi or pdb, search for your protein or gene and download the sequence from there.