this was really helpful for a non-bioinformatic researcher like me to understand whats going on. Especially the parts where you showed command by command to create two environments. Most of the youtube videos overestimate the programming skills of non-bioinformaticians and forget that it is them who watch these videos. Also, i like how you explain everything without missing even the minor stuff :D thanks
Great video and thank you for the tutorial! Would it be possible to make a tutorial about Virtual machines, cloud computing systems and docker? Thank you so much again!
Renv linked the packages from your cache rather than installing them from fresh - this process won't be as quick for others who haven't already use renv to install them previously and hence won't be present in the renv cache . Your script would benefit from having the renv activate and restore code at the start else when you share it the project won't load and restore the environment. Great video - love your channel.
You're absolutely right that when sharing a project, it's crucial to consider how the environment is set up for others who may not have previously used renv. Having renv activate and restore at the start is crucial. I'll update my script accordingly. Thank you for pointing that out!
Yeah we saw that too, we end up having to debug renv quite a bit when it starts being tricky so having the discrete steps in code makes it easier to re run/ double check etc. We also run R out into continuous integration gitlab dockers and wanted to be sure that each step is being run but you could probably get rid of the activate step and let it take take of itself.
this was really helpful for a non-bioinformatic researcher like me to understand whats going on. Especially the parts where you showed command by command to create two environments. Most of the youtube videos overestimate the programming skills of non-bioinformaticians and forget that it is them who watch these videos. Also, i like how you explain everything without missing even the minor stuff :D thanks
thank you very much for this amazing video!! you help me a lot to understand how conda works!
What a fantastic overview of Conda. Thank you so much. You've answered all of my questions.
Great timing on this video. I’m just getting started working in Conda and renv.. keep up the excellent work
Super awesome. Thank you!
Great to have this as a resource
Always wonderful! Thank you
Useful video lesson.. 👍
Please upload GWAS data analysis..
Great video and thank you for the tutorial! Would it be possible to make a tutorial about Virtual machines, cloud computing systems and docker?
Thank you so much again!
Is it feasible to make a detailed overview on how to construct a Metagenomics pipeline?
Thanks
Renv linked the packages from your cache rather than installing them from fresh - this process won't be as quick for others who haven't already use renv to install them previously and hence won't be present in the renv cache . Your script would benefit from having the renv activate and restore code at the start else when you share it the project won't load and restore the environment. Great video - love your channel.
You're absolutely right that when sharing a project, it's crucial to consider how the environment is set up for others who may not have previously used renv. Having renv activate and restore at the start is crucial. I'll update my script accordingly. Thank you for pointing that out!
But, there is that .Rprofile file that redirects to renv/activate.R which activates renv at the start? what's the reason to have it in the script?
Yeah we saw that too, we end up having to debug renv quite a bit when it starts being tricky so having the discrete steps in code makes it easier to re run/ double check etc. We also run R out into continuous integration gitlab dockers and wanted to be sure that each step is being run but you could probably get rid of the activate step and let it take take of itself.
Very useful
Thank you for the video. Very helpful. One suggestion though...your subtitles are blocking the code that you are trying to show. Thank you again.
mam, i have installed conda, when i give conda show channels, bioconda is not installed , it is showing conda script py error
Mam can you please guide me on how to install ascend
Can you do a video on how to install cell ranger on linux?
hi are you still working as a scientist also at some lab?
P R O M O S M 😘