- Видео 252
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Euro-BioImaging Communication
Добавлен 4 сен 2017
Euro-BioImaging is the European landmark research infrastructure for biological and biomedical imaging as recognised by the European Strategy Forum on Research Infrastructures (ESFRI). Through Euro-BioImaging, life scientists can access imaging instruments, expertise, training opportunities and data management services that they might not find at their home institutions or among their collaboration partners. All scientists, regardless of their affiliation, area of expertise or field of activity can benefit from these pan-European open access services, which are provided with high quality standards by leading imaging facilities.
Workshop on Remote Access for Electron Microscopy with ZEISS
This workshop was co-organized by ZEISS, Euro-BioImaging and Instruct as part of the eRImote project and delivered by training and application specialists from Thermo Fisher Scientific. Content is targeted at facility staff and advanced users that want to explore how to integrate remote access into their electron microscopy workflows.
The workshop encompasses remote operations including live demonstration for 3D FIB-SEM acquisition, ZEISS Predictive Service and IT Security topics.
00:11:18 Remote control: ZEISS application support and training on a FIB-SEM XB550
00:44:10 Use case: 3D FIB-SEM data acquisition
00:58:02 ZEISS Predictive Service: remote diagnosis and data insights
01:10:18 IT Secu...
The workshop encompasses remote operations including live demonstration for 3D FIB-SEM acquisition, ZEISS Predictive Service and IT Security topics.
00:11:18 Remote control: ZEISS application support and training on a FIB-SEM XB550
00:44:10 Use case: 3D FIB-SEM data acquisition
00:58:02 ZEISS Predictive Service: remote diagnosis and data insights
01:10:18 IT Secu...
Просмотров: 79
Видео
Image Data Resource (IDR): a Scalable Resource for FAIR Biological Imaging Data
Просмотров 1621 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Jean-Marie Burel, University of Dundee, Scotland Topics: Overview of the IDR and metrics, requirements and submission, trying to be FAIR: browsing data, data retrieval, linked metadata, reproducible analysis, future directions Music: The Success by Keys of Moon | soundcloud.com/keysofmoon Music promo...
EMBL-EBI Imaging Resources: EMPIAR and BioImage Archive
Просмотров 2121 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Matthew Hartley, EMBL-EBI, Hinxton, United Kingdom Topics: Data resources at EMBL-EBI, EMPIAR - scope, holdings, data access and deposition, BioImage Archive - scope, holdings, metadata requirements, anatomy of an entry, data retrieval, deposition procedure, future directions Music: The Success by Ke...
Introduction into FAIR Data
Просмотров 2121 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Isabel Kemmer, Euro-BioImaging Bio-Hub, EMBL Heidelberg, Germany Topics: FAIR principles, benefits of FAIR data, FAIR data vs. Open data, challenges for FAIR bioimage data, types of repositories, persistent identifiers, licenses, metadata standards, ontologies, metadata tools, data management Euro-Bi...
Euro-BioImaging Image Data Services
Просмотров 1821 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Aastha Mathur, Euro-BioImaging Bio-Hub, EMBL Heidelberg, Germany Topics: Introduction into Euro-BioImaging, offering image data services, empowering the imaging community Music: The Success by Keys of Moon | soundcloud.com/keysofmoon Music promoted by www.free-stock-music.com Creative Commons / Attri...
Tooling Around the Next-Generation File Format OME-Zarr
Просмотров 2221 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Buğra Özdemir, Euro-BioImaging Bio-Hub, EMBL Heidelberg, Germany Topics: next-generation file formats, features of OME-Zarr, NGFF viewer ecosystem: n5-reader and Vizarr, image conversion to OME-Zarr (BatchConvert), image processing in OME-Zarr (ome_zarr_pyramid) BatchConvert: github.com/Euro-BioImagi...
Developing Tools for FAIRification of Preclinical Data
Просмотров 1321 день назад
From the Workshop ‘Euro-BioImaging’s Guide to FAIR Bioimage Data 2024’ (23 May 2024) Presenter: Feriel Ramdhane, Euro-BioImaging Med-Hub, Turin, Italy Topics: FAIR limitations for the preclinical level, metadata repository PIDAR, XNAT for preclinical centers, tools for quality assessment Music: The Success by Keys of Moon | soundcloud.com/keysofmoon Music promoted by www.free-stock-music.com Cr...
Unraveling cancer metabolism with genetic encoded fluorescent based metabolic reporters
Просмотров 59Месяц назад
In this Virtual Pub/Cancer Metabolism Series with the International Society for Cancer Metabolism (ISCaM), Maria Rodriguez Colman, UMC Utrecht, delivers a talk on "Unraveling cancer metabolism with genetic encoded fluorescent based metabolic reporters.” Learn more about the Virtual Pub: www.eurobioimaging.eu/about-us/virtual-pub Learn more about ISCaM: iscam.net Read the abstract: www.eurobioim...
Workshop on Remote Access for Electron Microscopy with Thermo Fisher Scientific
Просмотров 70Месяц назад
This workshop was co-organized by Thermo Fisher Scientific, Euro-BioImaging and Instruct as part of the eRImote project and delivered by training and application specialists from Thermo Fisher Scientific. Content is targeted at facility staff and advanced users that want to explore how to integrate remote access into their electron microscopy workflows. The workshop encompasses remote operation...
Quantitative phase imaging in mechanobiology
Просмотров 1322 месяца назад
Jaromír Gumulec, Masaryk University, on "Quantitative phase imaging in mechanobiology. "
Dissecting cellular organization using super-resolution microscopy and optogenetics
Просмотров 1072 месяца назад
In this Virtual Pub recording, Lukas Kapitein, Utrecht University, gives a talk on "Dissecting cellular organization using super-resolution microscopy and optogenetics." Learn more about the Virtual Pub: www.eurobioimaging.eu/about-us/virtual-pub
Automating Data Extraction for Research
Просмотров 203 месяца назад
At the Euro-BioImaging User Forum on Image Data, Pedro Mallol, La Fe University and Polytechnic Hospital, BIMCV Node, explains the work of his group on imaging biomarkers and artificial intelligence. Full abstract: www.eurobioimaging.eu/news/automating-data-extraction-for-research/
Providing customized bioimage analysis advices & workflows with FBIAS
Просмотров 273 месяца назад
At the Euro-BioImaging User Forum on Image Data, Anne-Sophie Mace, Institut Curie, France-BioImaging Node, gave a talk on FBIAS entitled "Providing customized bioimage analysis advices & workflows through a nationwide, remotely-operating core-facility." Full abstract: www.eurobioimaging.eu/news/providing-customised-bioimage-analysis-advice workflows-through-a-nationwide-remotely-operating-cor/
Light My Cells, the first France BioImaging Image Challenge
Просмотров 293 месяца назад
At the Euro-BioImaging User Forum on Image Data, Dorian Kauffmann, FBI Data Project, France-BioImaging Node, presented the Light My Cells France-Bioimaging Challenge, including a discussion of the cChallenge process and metrics, as well as the constitution of the challenge dataset from multiple facilities across France. Full abstract: www.eurobioimaging.eu/news/light-my-cells-the-first-france-b...
STAGETOOL: Deploying deep learning for a wider audience
Просмотров 483 месяца назад
At the Euro-BioImaging User Forum on Image Data, Oliver Meikar, University of Tartu, Junel Solis, Turku Bioimaging, Finnish Advanced Microscopy Node, presented STAGETOOL, a project aimed to bridge the gap between a research tool intended for a small number of users, and scaling up its deployment to a production environment that increases accessibility while catering to a wider audience. Full ab...
Light-sheet microscopy: What to do with my large imaging data?
Просмотров 433 месяца назад
Light-sheet microscopy: What to do with my large imaging data?
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology
Просмотров 393 месяца назад
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology
KNOAP Challenge and data management with XNAT
Просмотров 113 месяца назад
KNOAP Challenge and data management with XNAT
From Pixels to Patterns: Comprehensive Analysis of Whole Mouse Brain Lightsheet Images
Просмотров 423 месяца назад
From Pixels to Patterns: Comprehensive Analysis of Whole Mouse Brain Lightsheet Images
Meet Euro-BioImaging's Polish Node - Part 3
Просмотров 1793 месяца назад
Meet Euro-BioImaging's Polish Node - Part 3
Meet Euro-BioImaging's Polish Node - Part 2
Просмотров 2043 месяца назад
Meet Euro-BioImaging's Polish Node - Part 2
Meet Euro-BioImaging's Polish Node - Part I
Просмотров 1673 месяца назад
Meet Euro-BioImaging's Polish Node - Part I
An MRI-CEST Method for the Detection of Water Cycling across Cellular Membranes
Просмотров 333 месяца назад
An MRI-CEST Method for the Detection of Water Cycling across Cellular Membranes
Tools from AI4Life that anyone can use
Просмотров 1793 месяца назад
Tools from AI4Life that anyone can use
Gaining more from time-lapse microscopy through automated single-cell phenomics
Просмотров 11 тыс.4 месяца назад
Gaining more from time-lapse microscopy through automated single-cell phenomics
Josh Moore on Next Generation File Formats
Просмотров 1005 месяцев назад
Josh Moore on Next Generation File Formats
MR neuroimaging in basic stroke research
Просмотров 645 месяцев назад
MR neuroimaging in basic stroke research
Walk-through body PET scanner for high-throughput imaging at lower cost
Просмотров 445 месяцев назад
Walk-through body PET scanner for high-throughput imaging at lower cost
We are QPI microscopy!