Hi! I'm having trouble with image J... Is there any way I could convert the image to JPEG without opening the picture in the first place? Because when I try to open it it takes so long. Great video, thanks!
Using ZEN lite (blue) and Fiji how can I get a flattened image. I have confocal image in z stack and I want to have a flattened image so I can see all the layers in one single image. Thanks.
Hello, here is the process. open the zstack image using ImageJ. now click on image, stacks and z project. You may now choose the number of slices and select from the various options from the projection type. all the images should now be in a single file
Hello, I am trying to code a macro that opens a CZI file and then the macro asks which serie you want to work with and then open only this one ? Do you have any clue on how to code that ? Thank you very much
the zen lite software can be downloaded and installed in windows os system. here is the link www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html
1:05 this dialogue box stopped appearing for me, it opens the file straight away in composite mode. I need to open this window to choose Collorized option because I need it. Can you help me?
hello, thanks for reaching out. Please try updating the bioformats plugin, or remove the old one and install the plugin again. Here is an alternative video to convert zen file to tiff automatically ruclips.net/video/cc-bryk_ihw/видео.html
Hi. Thank you for your video. I am getting crazy. I can not open a czi file this way. When I try, it come into an error and the file open is a bunch of letters... can you help me?
Hello, if you are using Fiji the bio-formats plugin need to be installed. here are the steps. 1) open Fiji, help and click on update, 2) in the image updater window click on manage update sites, 3) in the manage update sites window scroll down to find Bio-Formats and check/select the box on the left hand side, 4) click apply and close. 5) in the image updater window click apply changes. 6) this should download the plugin. 7) restart the fiji and follow the tutorial. Hope this helps. let me know if that worked. here is the link to another video that shows these steps of installing the bio-formats plugin. it demonstrates converting lif file to tiff ruclips.net/video/-vFS_A0wdOs/видео.html
Thank you so much for watching my videos. I am thrilled to hear that you found the video extremely useful. RUclips truly is an amazing platform for sharing knowledge, and I am glad to contribute to that. A good news, I have uploaded another version of converting Zeiss format to Tiff. I tired combining a macro and Bio-formats plugin to automatically convert in a few clicks. Please visit ruclips.net/video/cc-bryk_ihw/видео.html
Super helpful, thank you so much I couldn't find out how to do this anywhere and I've been looking for hours!!! You're a lifesaver
Awesome. Great to hear you found it useful. all the best
thank you so much!
You are welcome. Glad you found it useful
THANK YOU!!!!
Welcome! Here is another video to automatically convert in a batch mode ruclips.net/video/cc-bryk_ihw/видео.html
Hi! I'm having trouble with image J... Is there any way I could convert the image to JPEG without opening the picture in the first place? Because when I try to open it it takes so long.
Great video, thanks!
Hello, Thank you for reaching out. Here is a link to another video that may solve your concern ruclips.net/video/cc-bryk_ihw/видео.html
I there any faster option to covert bulk czi files to jpg
Hello, please have a look at this video ruclips.net/video/cc-bryk_ihw/видео.html
Using ZEN lite (blue) and Fiji how can I get a flattened image. I have confocal image in z stack and I want to have a flattened image so I can see all the layers in one single image. Thanks.
Hello, here is the process. open the zstack image using ImageJ. now click on image, stacks and z project. You may now choose the number of slices and select from the various options from the projection type. all the images should now be in a single file
Hello, I am trying to code a macro that opens a CZI file and then the macro asks which serie you want to work with and then open only this one ? Do you have any clue on how to code that ?
Thank you very much
Hello, thanks for reaching out. Please have a look at this video if that would solve your query ruclips.net/video/cc-bryk_ihw/видео.html
can you pls make video about installing zen lite software🙏🙏🙏
the zen lite software can be downloaded and installed in windows os system. here is the link www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html
1:05 this dialogue box stopped appearing for me, it opens the file straight away in composite mode. I need to open this window to choose Collorized option because I need it. Can you help me?
hello, thanks for reaching out. Please try updating the bioformats plugin, or remove the old one and install the plugin again. Here is an alternative video to convert zen file to tiff automatically ruclips.net/video/cc-bryk_ihw/видео.html
Hi. Thank you for your video. I am getting crazy. I can not open a czi file this way. When I try, it come into an error and the file open is a bunch of letters... can you help me?
Hello, if you are using Fiji the bio-formats plugin need to be installed. here are the steps. 1) open Fiji, help and click on update, 2) in the image updater window click on manage update sites, 3) in the manage update sites window scroll down to find Bio-Formats and check/select the box on the left hand side, 4) click apply and close. 5) in the image updater window click apply changes. 6) this should download the plugin. 7) restart the fiji and follow the tutorial. Hope this helps. let me know if that worked.
here is the link to another video that shows these steps of installing the bio-formats plugin. it demonstrates converting lif file to tiff ruclips.net/video/-vFS_A0wdOs/видео.html
Hello, i hope u are ok. I got two channels and 1000 time steps. So it has 2000 images. How can i save them?
Hello, thanks for the question. I think writing a macro could probably solve it.
wow . this video changed my life , my mind , my way of using youtube. crazy. 3am youtube challenge gone sexual?????????????????
Thank you so much for watching my videos. I am thrilled to hear that you found the video extremely useful. RUclips truly is an amazing platform for sharing knowledge, and I am glad to contribute to that. A good news, I have uploaded another version of converting Zeiss format to Tiff. I tired combining a macro and Bio-formats plugin to automatically convert in a few clicks. Please visit ruclips.net/video/cc-bryk_ihw/видео.html