Dear Mike, Thank you for the explanation on the transcriptome assembly! If it's ok for you, May I ask you some questions regarding to the Trinity software on the de novo assembly? I am new to this and the codes for trinity to work really give me a hard time:(
Dear Mike , thanks for the tutorial, in the case of doing multiple samples up to 35 . How can i write the Trinity script? I have used this script, but failed. What am i not doing right? Trinity --seqType fq --max_memory 200G /--no_salmon -- ${dir}/${dir%%/}_1.fq.gz /-- ${dir}/${dir%%/}_2.fq.gz / --CPU 20 -- output Trinity_output/${dir%%/}
Please, make a video on counting unigenes.
Dear Mike, Thank you for the explanation on the transcriptome assembly! If it's ok for you, May I ask you some questions regarding to the Trinity software on the de novo assembly? I am new to this and the codes for trinity to work really give me a hard time:(
Dear Mike , thanks for the tutorial, in the case of doing multiple samples up to 35 . How can i write the Trinity script?
I have used this script, but failed. What am i not doing right?
Trinity --seqType fq --max_memory 200G /--no_salmon -- ${dir}/${dir%%/}_1.fq.gz /-- ${dir}/${dir%%/}_2.fq.gz / --CPU 20 -- output Trinity_output/${dir%%/}
github.com/trinityrnaseq/trinityrnaseq/wiki/Running-Trinity That's where I'd start.