This particular set of data is still in manuscript writing stages, but we hope to submit before the end of the year. In general though, you are just seeing bam files being visualized. If you have mapped sequence data (bam file), you should be able to visualize it very similarly to how I am here. I think the other input that you aren't seeing is a reference sequence and gene annotation. You need the former file (usually a fasta file) and you only optionally need the annotation file (gff3). The way we identified the locations to analyze (the structural variants) were through analysis with GATK and DELLY which are two different variants analysis data tools.
thanks it was a great video, i was able to clearly see deletions after watching!
Nice work, Nolan. Good to see how you explain the different views.
Thank you!
Hi, the video is very helpful, but I am wondering where do you find the data?
This particular set of data is still in manuscript writing stages, but we hope to submit before the end of the year. In general though, you are just seeing bam files being visualized. If you have mapped sequence data (bam file), you should be able to visualize it very similarly to how I am here.
I think the other input that you aren't seeing is a reference sequence and gene annotation. You need the former file (usually a fasta file) and you only optionally need the annotation file (gff3).
The way we identified the locations to analyze (the structural variants) were through analysis with GATK and DELLY which are two different variants analysis data tools.