@@GenomicsBootCamp Hi, I would like to run PCA on SNP genotype data (21 loci). I have my data as codominant markers in GeneAIEx but can export the data in Phylip format. I do not yet have phenotype data to do any association analysis. Can I run PCA analysis successfully with this approach even though I have no phenotype data?
A genotype phasing and impute genotypes video would be great
Thanks for the suggestion! Will try to do something in this direction. Timeline unclear.
Hi can you provide detail tutorial about genotype phasing and imputation from reference data.
Thanks for the suggestion! Will try to do something in this direction. Timeline unclear.
@@GenomicsBootCamp Hi, I would like to run PCA on SNP genotype data (21 loci). I have my data as codominant markers in GeneAIEx but can export the data in Phylip format. I do not yet have phenotype data to do any association analysis. Can I run PCA analysis successfully with this approach even though I have no phenotype data?