Genome wide study Part 17 | How to extract Gene Expression Data from NCBI GEO | Expression analysis

[@stargamblt473]

Study Channel thanks sharing information❤️#STARGAMBIT🔥

[@scivam6611]

Sir please make a vid on extracting fpkm data from SRA data please

[@roadtonature3203]

Dr sb deer zbr10

[@mahakhan4468]

Great

[@muhammadakram7990]

well explained video. bravoo, keep it up. very informative....

[@genomewidestudy]

Thanks. Appreciated

[@90shoukat]

INFORMATIVE

[@azizehshadi7605]

👍👍👍

[@genomewidestudy]

Thanks

[@aliaslam3303]

Dear Brother,
Please make another video to see domain structure using other softwares rather then Tbtools. It will be a great help.

[@castilloh.gianmarco1048]

Galaxy.

[@grsbiosciences]

Excellent sir

[@letsexplore1956]

Sir, How to retrieve NGS transcriptomic data of cancer patients or gene expression data from datasets? Is it possible to get survival analysis data?

[@muhammadshaban5056]

Good job Dr. sb., i want to know the values you extracted are RPKM values or FPKM values? can we directly use these values to construct heatmap or we have to use other software to normalize these values for gene expression ?

[@genomewidestudy]

Thanks for your comments.
It was written on the column heading that what type of this value is? So you can choose it accordingly.

[@worldofinformation815]

Well done Sir 🌹✔

[@genomewidestudy]

Thanks, Appreciated

[@essaali6101]

Awesome👍

[@genomewidestudy]

Thanks 🤗

[@Muhammad_Hafeez]

Excellent

[@genomewidestudy]

Thanks for watching. Appreciated

[@user-un4qx4st3x]

Can we select expression profiling by array ?
If we can't find paper in gene expression throughout profiling?

[@genomewidestudy]

Gene expression of your crop or your required treatment?

[@user-je8rq1ir3j]

Thank you very much for your nice explanation. Is it possible to extract gene expression data from a different Experiment type like 'Expression profiling by array' ? I found my interested gene family expressed in that experiment type. I tried several times but couldn't find the way to present data like you. Can you help in this regard ? Your assistance will be highly appreciated.

[@genomewidestudy]

I will check

[@madhavanjn]

Hi very did u obtained transcript file, how suddenly appeared in ur tutorial, can explain, thanks for ur video.

[@genomewidestudy]

Watch the previous videos.

[@sadiahakeem8488]

Very helpful. I downloaded the sequences of wheat from Phytozome with Gene Id as "Traes_6AS_80C96A4E51" while the identifier of expression data downloaded from NCBI GEO is in "TraesCS5A02G549900
" format. So, now how do I identify my genes that showed expression using Id "Traes_6AS_80C96A4E51" like this? Your guidance will be highly appreciated

[@genomewidestudy]

Thanks for appreciation. Are you sure the geo have such type of name. Is it have any other ID like NCBI or Gene ID or something else.

[@genomewidestudy]

Will you please send the file

[@sadiahakeem8488]

@@genomewidestudy Many Thanks for the response. However, I used "update your old IDs" option in ensemble to convert the Phytozome IDs. Solved the problem✌

[@rolandemarchellosavoldelli9039]

nice one new subbbbbbb here

[@gopalkalwan7465]

Sir I don't understand how you got physical data file please let me know I am not able to continue from 7.55 and help me.

[@genomewidestudy]

please follow video
Genome wide study part 04

[@gopalkalwan7465]

@@genomewidestudy thanks dr u r doing a great job