This is really interesting, I’m currently an apprentice in a cell engineering R&D group, Working with protein expression and base editing. Bioinformatics is a lucrative field for sure.
Came from the pandas series on corey shafer's channel! This is looking great so far ! Just sending you motivation to help you continue. I know nothing about biology so this is going to be super interesting in many ways 💪💪
Thank you so much for supporting independent educators. Corey is awesome and was one of the Inspirations for my series. I hope you will find something interesting and useful in my videos.
Hi Rebel, Thank you so much for sharing such inspiring video about bioinformatics. I am a Life Science degree holder and confused about my career objection. Now, after watching your video, I have finally made up my mind to be pursue my career in bioinformatics. Hope I can learn and gain more knowledge and experiences through your videos :)
Hey, it seems very charm. I am going to do my PhD in biodiversity genomics and probably in molecular evolution. My supervisor suggested me to learn Python and I am beginner, please go ahead, it is an excellent place for me to learn python. Please can you clear me about next videos, there is an ambiguity about the video that is coming next. Thank you for your effort ❤
Wow, exactly what I was searching for! Could I suggest to put the playlist in the video description or move the playlist to the top of all your play lists? It's a bit hard to find
Love you for this. I took bioinformatics during my biotech degree but really need to refresh my knowledge and gain some skills. We primarily used R and gitbash so i need some help in python.
If you want to save time, just learn python and then use the PYPY implementation of python which is a super fast implemenation of python (sometimes faster than C++). Java is dying. Python is growing
That's a great idea! Don't listen to people telling you to focus on a fast library with Python only. It may be fast as in a few specific situations but overall it just can't compete with compiled performance. Learn C++ and/or Java. It's hard to learn to program, learning another language is easy. They all do the same shit, once you have a programmer mind, you look up specifics for syntax or idioms of the language. By learning more than one language, much like a mathematic proof, you circle around and validate ideas to learn the constructs and algorithms of good programming practices.
Hi RebelCoder, Very nice series. Was very curious on your work on Longevity as I am getting into Bioinformatics for the very same reason. Would you recommend any guidelines on how can I pursue the knowledge or career in the field in relation to longevity
Thanks! I number the main set of videos as the have a logical progression (DNA Toolset). I think it has #1. New videos are coming very soon. I was busy moving.
@@Cerebelus Thank you so much! That was/is the plan. Some very cool stuff is coming up, where we will look at biological processes and replicate them in the code! Stay tuned. I am also still figuring this whole 'teaching' thing out and I definitely am grateful for any comments and suggestions.
Thank you! Feel free to read the following blog paper on Medium website “Apply Machine Learning Algorithms for Genomics Data Classification”. This will help anyone to understand how to apply Machine Learning algorithms for genomic data classification.
Hello, than you for your efforts and it interesting. As I am doing my master in molecular evolution and genomic sequence, its very important for me to learn it. Please it very important to know about the sequence of the lecturers as I am confused what is next ?
Just thought of switching into Bioinformatics and Computational Biology ...currently I'm in my 2nd year of B.Tech at IIT Kharagpur...I thought this will be a wonderful field to explore and enhance my Biology background back from High School and my programming experience in my 1st year of college...really looking forward from this course...Would appreciate if u let me know about the available job prospects ... are there any jobs available or not ... Love from INDIA
Quick question: what color theme are you using? or did you customize the colors yourself? P.S.: Really like your stile and thank you so much for all your great videos!
Hey! Thank you. I have configured my theme a long time ago and interestingly enough, it was changing on its own by becoming darker. I think extensions I was using for my theme kept getting updated and that is why it changed for me with the time. I will try figuring out my config and share it with you as a few other people were interested in this.
Thanks. I am more interested in researching/writing algorithms/tools for Bioinformatics. But I will probably cover data analysis as well. And some other stuff.
I have my Bachelors in Biology and have worked in a Microbiology wet lab for the last 4+ years. Do I have to go back to college to get into Bioinformatics or can I keep learning programming languages (I'm currently learning Python and R at the moment) and build a project to attach to my resumes to get my foot in the door?
Sorry for the late reply. If we are talking bout Bioinformatics specifically, my personal opinion is that you can pick it up on your own. There are courses on Coursera, books, etc. this is exactly what I am doing. I am transitioning from a programmer into Bioinformatics to do research in Cell Signalling and regeneration. This can all be learned, 100% online + books. Also, a good community is important. Please stay tuned as I might be announcing something related to a community ;) and a new series of videos is coming out soon also ;) Did you read my article on getting into Bioinformatics? rebelscience.club/2020/08/31/getting-started-in-bioinformatics-a-step-by-step-guide/
Iam studying Bioinformatics, should i start from this series "Bioinformatics in python", and may you recommend a course for me in edx or coursera, iam just beginner, thanks in advance
I suggest a few things in my Introductory video and also this article here: medium.com/@rebelCoderBio/want-to-get-into-programming-or-bioinformatics-but-not-sure-where-to-start-1b2fc238fb3d?source=friends_link&sk=180bf635ffe439231ac3005ef6bf32cb
9:11 absolutely... I never liked programming, and always hated the stupid programs my instructors would usually give. The truth is that I just never saw much of an important problem worth the efforts of coding, that's challenging and rewarding
In my degree we used R, however i want to learn python since it seems more universal. All i know is that R is better for data presentation, what else is R better or worse at compared to python?
I have to say that R being better for anything is not true. You have countless Python modules for data presentation. In my personal experience, Python is a perfect language for anything. Even high performance code in a lot of cases.
In the DNA Toolkit series, we create a base set of tools to work with DNA/RNA data. There is a new series of videos, "Genome Toolkit" in works, which will use our DNA Toolkit as the foundation. In that new series, we will be creating an extensive library of tools for Genome analysis. Stay tuned.
I've subscribed..i am starting my msc bioinformatics this September with a microbiology Bachelor. No knowledge in CS.. please help me...guide me please..
You are welcome. Books listed in this video are not free. I have a list of good free resources here: rebelscience.club/2020/08/getting-started-in-bioinformatics-a-step-by-step-guide/
Hey. Of course. You can use any code editor or Development Environment (IDE) you are the most comfortable with. If you ate a total beginner, I would recommend using the same tools that the course you are doing uses to not waste time fixing your Spyder or Pycharm related issues.
@@rebelScience thank u but i just wanna say that the script you used in the other video didn't work with me in pycharm there are some error not defined I'm still a beginner in this file
Sorry, are you asking if there will be videos related to proteins on this channel? Yes, of course. We will start looking at proteins in a next few videos. We are building a set of basic tools to help us process more complex things like proteins.
This is outstanding. I am a software engineer and have been coding for over a decade. I know Java, Kotlin, C++ and a touch of Python. I am sure enough to follow along... man at 42 I hope I'm not too old to start switching domains (was Android)...but I want to solve some problems in biology.
Nope. I mentioned in my introduction video, that I have a computer science (programming) background, and I am transitioning into Bioinformatics field on my own.
@@rebelScience Do you think that a high school (11th grade) student could start learning without college level math and biology? If not what are the essential things to learn? Thank you
you can try doing that by: learning how to program computer very very good. On top of that, you learn about statistical methods and biology of the cell. It is a good start. Internet is full of free resources to get you started. After you have very good understanding of the above, you will know where to go and how to progress.
Hey. Sorry, I am not sure what you mean by the 'scope of bioinformatics'. It is a science where statistics, mathematics, computation and biology (roughly speaking) come together. Well, what is the scope of mathematics? there is none. Everything is mathematics :)
Well. It is the same as computer programming. You can program anything. Robots, games, apps, web sites, cell simulations. Bioinformatics is the same. You can work on endless amount of things. Drug discovery, disease detection and prevention, gene therapy, list is endless. I would say there is no scope.
Well, that is how people learn things for the most part. Bioinformatics is not different from anything else you want and can learn. It is a field that includes a few fields in it. That's it.
Great video, looking forward to watching the rest of the series!
This is absolutely great and thanks for introducing OMGenomics. Learned a lot of things through these channels. Keep it up the great work.
This is really interesting, I’m currently an apprentice in a cell engineering R&D group, Working with protein expression and base editing. Bioinformatics is a lucrative field for sure.
junior molecular biologist here. Thank you for these very informative videos. Keep up the excellence!!
Amazing! Just as I decided to learn bioinformatics.
Cool! I am learning bioinformatics too. I love sharing what I have learned. I hope my videos help you!
From watching this introduction video this looks like a fascinating series. Well done for choosing an original subject. Liked and Subbed.
Nice vids! Waiting for the next ones!
Thank you so so much! This tutorial is just what I was looking for! Keep this fabulous job up ☕
Thank you! Will do!
Thanks! Very interesting ! I'm waiting for more information.
As these pandemic times appear to have no end, I decided to start learning bioinformatics and these videos will be a great help, thanks!!!
How ya doing now? Are you rich?
Thanks alot man...we owe you alot
So excited to beguin this series, as im really intrested in this field, keep up the good work!
Came from the pandas series on corey shafer's channel! This is looking great so far ! Just sending you motivation to help you continue. I know nothing about biology so this is going to be super interesting in many ways 💪💪
Thank you so much for supporting independent educators. Corey is awesome and was one of the Inspirations for my series. I hope you will find something interesting and useful in my videos.
Really looking forward to this series 🔥
Thank you. I am looking forward too.
I want to work in the longevity and anti aging field, this will be a useful resource. Thanks
Thank for this video its has so much helpful stuff!
Just started learning bioinformatics.. I see you have a lot of content that I need. Thanks..
Great to hear!
Omg thank you so so much!
Legit thank you so much!!!
keep up good work: ) looking forward to it
I appreciate your feedback. We are getting into some complex but interesting stuff soon!
Thank you very much!
That's really great! I'll follow for sure, ty.
Thanks so much! Expect to see much more content in upcoming months.
Appreciated ..love from India:)
Wow all in one channel its pretty cool ❤
Hi Rebel,
Thank you so much for sharing such inspiring video about bioinformatics. I am a Life Science degree holder and confused about my career objection. Now, after watching your video, I have finally made up my mind to be pursue my career in bioinformatics.
Hope I can learn and gain more knowledge and experiences through your videos :)
Will u join in bioinformatics
@@hemayalamanchi6575 yes! If ever u have any opportunity, I’d like to help out and learn
Thank you I am a molecular biologist and have always wanted to get started with real bioinformatics.
Best of luck!
Hey, it seems very charm. I am going to do my PhD in biodiversity genomics and probably in molecular evolution. My supervisor suggested me to learn Python and I am beginner, please go ahead, it is an excellent place for me to learn python. Please can you clear me about next videos, there is an ambiguity about the video that is coming next.
Thank you for your effort ❤
Wow, exactly what I was searching for! Could I suggest to put the playlist in the video description or move the playlist to the top of all your play lists? It's a bit hard to find
Super useful
Love you for this. I took bioinformatics during my biotech degree but really need to refresh my knowledge and gain some skills. We primarily used R and gitbash so i need some help in python.
Glad it was helpful!
I took the course in Spring 2019. You don't know how much I desired to find tutorial like this. My next step is JAVA for biologist.
If you want to save time, just learn python and then use the PYPY implementation of python which is a super fast implemenation of python (sometimes faster than C++). Java is dying. Python is growing
yep, pypy is just java pith python syntax. Or you can use cython which is C with python syntax, even faster
That's a great idea!
Don't listen to people telling you to focus on a fast library with Python only.
It may be fast as in a few specific situations but overall it just can't compete with compiled performance.
Learn C++ and/or Java.
It's hard to learn to program, learning another language is easy.
They all do the same shit, once you have a programmer mind, you look up specifics for syntax or idioms of the language.
By learning more than one language, much like a mathematic proof, you circle around and validate ideas to learn the constructs and algorithms of good programming practices.
Hi RebelCoder, Very nice series. Was very curious on your work on Longevity as I am getting into Bioinformatics for the very same reason. Would you recommend any guidelines on how can I pursue the knowledge or career in the field in relation to longevity
Very much interested in this series 👍👍
Awesome, thank you!
Subscribed. I really like how you explain this stuff. I want to learn more. Tip: I would number the videos like #1 #2. Keep up the good work.
Thanks! I number the main set of videos as the have a logical progression (DNA Toolset). I think it has #1. New videos are coming very soon. I was busy moving.
@@rebelScience Super! I think with these videos you contribute to a better world. I like how you teach.
@@Cerebelus Thank you so much! That was/is the plan. Some very cool stuff is coming up, where we will look at biological processes and replicate them in the code! Stay tuned. I am also still figuring this whole 'teaching' thing out and I definitely am grateful for any comments and suggestions.
All open-source tools, open science for everyone!
@@rebelScience You are on the right track don't worry. Offering value is all that matters. I will watch all your videos for sure.
nice!
Plss do more vedios regarding java and R programming in bioinformatics
Thank you! Feel free to read the following blog paper on Medium website “Apply Machine Learning Algorithms for Genomics Data Classification”. This will help anyone to understand how to apply Machine Learning algorithms for genomic data classification.
Hello, than you for your efforts and it interesting. As I am doing my master in molecular evolution and genomic sequence, its very important for me to learn it.
Please it very important to know about the sequence of the lecturers as I am confused what is next ?
Just thought of switching into Bioinformatics and Computational Biology ...currently I'm in my 2nd year of B.Tech at IIT Kharagpur...I thought this will be a wonderful field to explore and enhance my Biology background back from High School and my programming experience in my 1st year of college...really looking forward from this course...Would appreciate if u let me know about the available job prospects ... are there any jobs available or not ... Love from INDIA
Quick question: what color theme are you using? or did you customize the colors yourself? P.S.: Really like your stile and thank you so much for all your great videos!
Hey! Thank you. I have configured my theme a long time ago and interestingly enough, it was changing on its own by becoming darker. I think extensions I was using for my theme kept getting updated and that is why it changed for me with the time. I will try figuring out my config and share it with you as a few other people were interested in this.
Thank you for ur video! Is ur series going to focus more on software development side or data analysis side?
Thanks. I am more interested in researching/writing algorithms/tools for Bioinformatics. But I will probably cover data analysis as well. And some other stuff.
Is Python used for Lipidomics or metabolomics data analysis?
cool bro keep posting....
Thanks. I will.
thanks never got a heart XD
I found a gem
do i need to finish all the videos of the python course done by Corey Schafer?
It depends on what you already know. I would do them in parallel.
OMG i just stumbled on a gold mine
I have my Bachelors in Biology and have worked in a Microbiology wet lab for the last 4+ years. Do I have to go back to college to get into Bioinformatics or can I keep learning programming languages (I'm currently learning Python and R at the moment) and build a project to attach to my resumes to get my foot in the door?
Sorry for the late reply. If we are talking bout Bioinformatics specifically, my personal opinion is that you can pick it up on your own. There are courses on Coursera, books, etc. this is exactly what I am doing. I am transitioning from a programmer into Bioinformatics to do research in Cell Signalling and regeneration. This can all be learned, 100% online + books. Also, a good community is important. Please stay tuned as I might be announcing something related to a community ;) and a new series of videos is coming out soon also ;) Did you read my article on getting into Bioinformatics? rebelscience.club/2020/08/31/getting-started-in-bioinformatics-a-step-by-step-guide/
Iam studying Bioinformatics, should i start from this series "Bioinformatics in python", and may you recommend a course for me in edx or coursera, iam just beginner, thanks in advance
I suggest a few things in my Introductory video and also this article here: medium.com/@rebelCoderBio/want-to-get-into-programming-or-bioinformatics-but-not-sure-where-to-start-1b2fc238fb3d?source=friends_link&sk=180bf635ffe439231ac3005ef6bf32cb
9:11 absolutely... I never liked programming, and always hated the stupid programs my instructors would usually give. The truth is that I just never saw much of an important problem worth the efforts of coding, that's challenging and rewarding
U sure about ur telegram link u mentioned? Can't find it!
Tnx for ur videos.. interesting !
Hey. Yes. Everyone is joining by clicking the link in the description or searching for - biocodex in Telegram
In my degree we used R, however i want to learn python since it seems more universal. All i know is that R is better for data presentation, what else is R better or worse at compared to python?
I have to say that R being better for anything is not true. You have countless Python modules for data presentation. In my personal experience, Python is a perfect language for anything. Even high performance code in a lot of cases.
@@rebelScience Ok great i will definitely have a look through all of your videos, thank you very much :)
Does anyone know if this course ever gets into genome comparisons?
In the DNA Toolkit series, we create a base set of tools to work with DNA/RNA data. There is a new series of videos, "Genome Toolkit" in works, which will use our DNA Toolkit as the foundation. In that new series, we will be creating an extensive library of tools for Genome analysis. Stay tuned.
@@rebelScience awesome!
I've subscribed..i am starting my msc bioinformatics this September with a microbiology Bachelor. No knowledge in CS.. please help me...guide me please..
can assist u with cs facebook.com/karimse.se.5
thank you very good it is pretty good, please the books are for free??
You are welcome. Books listed in this video are not free. I have a list of good free resources here: rebelscience.club/2020/08/getting-started-in-bioinformatics-a-step-by-step-guide/
@@rebelScience thank you very much
can pycharm or spyder be used for bioinformatics?
Hey. Of course. You can use any code editor or Development Environment (IDE) you are the most comfortable with. If you ate a total beginner, I would recommend using the same tools that the course you are doing uses to not waste time fixing your Spyder or Pycharm related issues.
Also, I have a video on a full VSCODE setup to run your python code in one click. So you can focus on programming and not fighting your code editor.
@@rebelScience i usually write python codes in jupyter notebook.
Are u working with visual code?
Yes. I also mention this In this video. I have another video called Development Tools you might be interested in.
@@rebelScience thank u but i just wanna say that the script you used in the other video didn't work with me in pycharm there are some error not defined
I'm still a beginner in this file
Is there bioinfomatics on protein?
Sorry, are you asking if there will be videos related to proteins on this channel? Yes, of course. We will start looking at proteins in a next few videos. We are building a set of basic tools to help us process more complex things like proteins.
@@rebelScience Thank you ver much!
No Github link in discription!!!???
You will get it when we actually start working on stuff. Which is the next video. I can send you an empty git repo if you want. Hahah. Just joking.
@@rebelScience Ok No problem!!
@@rebelScience Actually i am a biotechnology student with intermediate programming knowledge and thus will love to get ready made files... 😂
This is outstanding.
I am a software engineer and have been coding for over a decade.
I know Java, Kotlin, C++ and a touch of Python. I am sure enough to follow along... man at 42 I hope I'm not too old to start switching domains (was Android)...but I want to solve some problems in biology.
Are you bioinformatics major in university or grad school?
Nope. I mentioned in my introduction video, that I have a computer science (programming) background, and I am transitioning into Bioinformatics field on my own.
@@rebelScience Do you think that a high school (11th grade) student could start learning without college level math and biology? If not what are the essential things to learn? Thank you
I am about to release an article and a video on this matter. Stay tuned.
how do i code a program to cure cancer
you can try doing that by: learning how to program computer very very good. On top of that, you learn about statistical methods and biology of the cell. It is a good start. Internet is full of free resources to get you started. After you have very good understanding of the above, you will know where to go and how to progress.
Bro what is the scope of bioinformatics
Hey. Sorry, I am not sure what you mean by the 'scope of bioinformatics'. It is a science where statistics, mathematics, computation and biology (roughly speaking) come together. Well, what is the scope of mathematics? there is none. Everything is mathematics :)
@@rebelScience like job oriented
Well. It is the same as computer programming. You can program anything. Robots, games, apps, web sites, cell simulations. Bioinformatics is the same. You can work on endless amount of things. Drug discovery, disease detection and prevention, gene therapy, list is endless. I would say there is no scope.
@@rebelScience okay bro..Can i learn it without goi to college?
Well, that is how people learn things for the most part. Bioinformatics is not different from anything else you want and can learn. It is a field that includes a few fields in it. That's it.
i did masters in molecular biology. I just started learning bioinformatics. Am i too late for doing that?
what did you study