- Видео 17
- Просмотров 43 684
Stockton Maxwell
США
Добавлен 10 окт 2006
Dendrochronology in Action: Methane in Trees
In this video, I show methane burning as it escapes from my increment borer. Methane build up can occur as a bi-product of microbial decay. You can hear the gas escaping from the tree when you core it. This time I had a lighter to show that the gas is indeed methane.
Please be careful when collecting tree-ring samples. This was a controlled demonstration of methane burning. No harm came to the tree or the forest.
#Dendrochronology
Please be careful when collecting tree-ring samples. This was a controlled demonstration of methane burning. No harm came to the tree or the forest.
#Dendrochronology
Просмотров: 1 169
Видео
Climate-Growth Response Analysis in Dendrochronology
Просмотров 4,7 тыс.3 года назад
In this video, I show how to read in climate data and create a quick plot of a monthly climate variable. Then, using the treeclim() package in R, I show how to conduct monthly climate-growth response analysis for dendrochronology. For the example datasets and code, visit: sites.google.com/view/treeringist/dendro-help
Disturbance Analysis in Dendrochronology
Просмотров 1,6 тыс.3 года назад
In this video, I show how to use the TRADER() package in R to conduct disturbance analysis using the radial growth averaging technique by Nowacki and Abrams 1997. There are many techniques that can be used to detect growth releases and suppression so be sure to explore the functions in TRADER with your dataset. For example datasets and code, visit: sites.google.com/view/treeringist/dendro-help
Creating a tree-ring chronology in dplR
Просмотров 7 тыс.3 года назад
In this video, I show how to read in a .rwl file containing raw ring width measurements. Then, in the dplR package, I show how to get summary statistics of your data, segment length plots, and spaghetti plots. Finally, I talk briefly about detrending and standardization techniques and how to create your site chronology in the residual and standardized formats. For the example datasets and code,...
Finding Climate Data for Dendrochronology
Просмотров 1,1 тыс.3 года назад
In this video, I talk about climate data sources that I use for dendroclimatology and climate-growth analysis. Link to Useful Links for Dendrochronology - docs.google.com/document/d/1ZOSdRyvQZUvIu0hIC-M1cTX9mZijqMdO3LwD9VHNP5k/edit?usp=sharing Link to Treeringist website - sites.google.com/view/treeringist/home Link to my Github - github.com/treeringer
Cdendro Tutorial
Просмотров 9 тыс.3 года назад
In this tutorial, I show how to create a collection of tree-ring measurement series using the program Cdendro. The files used in Cdendro are created by measuring tree-ring images the partner program Coorecorder. For more on Coorecorder, please view my previous videos. Coorecorder Tutorial - ruclips.net/video/c-GNKHVUj9I/видео.html Coorecorder Tips - ruclips.net/video/xO7Phc93xyM/видео.html The ...
Coorecorder tips- earlywood/latewood, gaps, missing rings, etc.
Просмотров 4 тыс.4 года назад
In this video, I cover additional techniques for measuring ring widths in Coorecorder including setting earlywood/latewood boundaries, marking cracks or gaps, adding missing rings, metadata, and so on. If you use Coorecorder in your research, please cite: R. Stockton Maxwell & Lars-Ake Larsson. 2021. Measuring tree-ring widths using the CooRecorder software application. Dendrochronologia, Volum...
Dendrochronology in Action: Collecting a wedge sample from a fire-scarred tree
Просмотров 5834 года назад
In this video, my dendrochronologist colleague Tom Saladyga from Concord University in West Virginia shows how to collect a wedge sample from a fire-scarred tree. This is part of a new project Tom and I are beginning to examine the frequency of past wildfire activity in the Central Appalachian Mountains. Please note, this is a dangerous technique if you have not been trained properly. Use perso...
Radford University Tree Ring Lab Tour
Просмотров 3894 года назад
I'm an associate professor of Geospatial Science at Radford University. I specialize in dendrochronology. This is my new lab in the renovated Curie Hall and I am stoked. I'm excited to get more undergraduates in the lab! Contact me at rmaxwell2@radford.edu if you are interested.
Coorecorder Tutorial
Просмотров 10 тыс.5 лет назад
In this tutorial, I show how to measure a tree-ring sample using the program Coorecorder. If you use Coorecorder in your research, please cite: R. Stockton Maxwell & Lars-Ake Larsson. 2021. Measuring tree-ring widths using the CooRecorder software application. Dendrochronologia, Volume 67, 125841, doi.org/10.1016/j.dendro.2021.125841. The program is available for purchase here: www.cybis.se/for...
PCreg lecture
Просмотров 6055 лет назад
In this lecture, I demonstrate and discussion principal components regression using the PCreg program available from the Lamont Tree Ring Lab - www.ldeo.columbia.edu/tree-ring-laboratory/resources/software. This program can be used to reconstruct climate variables from tree-ring chronology predictors. Example files can be found here: drive.google.com/drive/folders/13O_4oIcq7IBIPcE8KxNSrXijIP0fb...
Network Analysis Demo
Просмотров 2265 лет назад
This is a network analysis tutorial demonstrating Service Area and Origin-Destination Cost Matrix analysis in ArcGIS Pro.
Radford Amazonian Research Expedition 2019 Promo
Просмотров 766 лет назад
The Radford Amazonian Research Experience (RARE) is a unique transdisciplinary study abroad experience enabling students to produce original scholarly works based on time spent at the Las Piedras Biodiversity Station, a SCHEV-certified off campus site in the Peruvian Amazon rainforest. Students spend the spring semester working closely with faculty directors to develop and plan their own indepe...
Las Piedras Biodiversity Station
Просмотров 3776 лет назад
The Las Piedras Biodiversity Station is the home of the Radford Amazonian Research Expedition (RARE) in Peru. RARE is a unique research abroad opportunity for students at Radford University. For more information on RARE, please visit www.radford.edu/content/rainforest/home.html. Our trips to the Peruvian Amazon are guided by Tamandua Expeditions (tamanduajungle.com/).
Google Timelapse of the Las Piedras River, Peru
Просмотров 1967 лет назад
This timelapse animation was captured from the Google Earth Engine. You can find the website here: earthengine.google.com/timelapse/
Majoring in Geospatial Science at Radford University
Просмотров 1927 лет назад
Majoring in Geospatial Science at Radford University
Hi Dr. Stockton Maxwell, I very appreciate the detailed introduction! I hava a question here, when do we need to normalize the tree ring data, cuz I didn't see any normalization before analyses? Looking forward to your reply! Thanks for the very useful video again~
It seems like half of the tree is gone from base does the tree survive after this?
Confusing! Do you need to run dcc function with climate of previous year’s May to current year’s October, if the chronology is residual? Pre whitening removes autocorrelation (persisrence). Then why is it necessary to look for -5 months? Can you explain it?
nice video. However, somewhere, incomplete explanation. For example, detrending method we choose depends on (17:10) the dataset and what types of signals to be retained. Do we need to understand that Cubic Smoothing Spline detrending method is for keeping climate signal (as shown in this video)? Why Freidman’s Super Smoother is not better than Spline for example for series 22, 26, 36 etc?
it's just an introductory tutorial. Real problem (what needs to be explained well) is how to perform crossdating with a rwl file with some misdated series, unlike all the correctly dated series in this tutorial
Hi Stockton thanks for your videos. Can I test the correlation between shorter samples (for example 30 years)?
You can do shorter time periods but the r values will need to be stronger to be significant. Also, you must be careful because degrees of freedom issues can arise.
Dear Maxwell, thank you very much for your video tutorials, which have been of great help to us beginners. I would like to ask you about the dcc function in R. I encountered an issue where it shows 'treeclim tries to use the maximum overlap in timespan for chronology and climate data. The overlap starts in NA, but to be able to use climate data from the previous year(s) (as you chose by setting 'selection' accordingly), the analysis starts in NA. Error in (start_year + offset):end_year: argument of length 0.' I saw someone else had the same problem in the comment section. Have there been any updates on this issue? I'd like to know the reason. Thank you.
Hello Max I'm a beginner when it comes to using R in dendronchronology studies and I follow your steps explained in your video for the treeclim package, I already had a chronology made, same with the date for temperatures and precipitation but when I want to run the code to made that dcc I've got this error treeclim tries to use the maximum overlap in timespan for chronology and climate data. The overlap starts in NA, but to be able to use climate data from the previous year(s) (as you chose by setting 'selection' accordingly), the analysis starts in NA. Error in (start_year + offset):end_year : argument of length 0 and I don't what to do to solve can you give me a piece of advice on how to solve. Thank you
Hi Cristian, if you email me the code I might be able to determine what the error is.
@@rawkton can you tell me what's your email please. Thank you
@@rawkton i don't know if my previous message was sent because RUclips acts very weird but I was asking what is your e-mail. Thank you!
rmaxwell2 at radford.edu
YES
Thanks for the video! Have you ever used the dendroTools package to check climate-growth correlations?
Wow that looks like a great time! What an awesome set up!
Very useful video, thanks!
Very helpful, thank you!
Good evening can help me in reading the rings in the picture (took2022)
Helped me a lot! XDateR is a very useful tool. Thank you so much for the tutorial!
Hi, thanks for the great videos. I am trying to teach myself Dendrochronology, but have no background in that field. If you have a sample but you do not know where it came from, how do you go about the process of finding the correct Master Chronology? Im struggling to understand this first part. Would you plot the tree rings in Coorecoder without the Master reference and then bring the file into Cdendro and import the .rwl files from the ITRDB and try to cross match it? Then if you find a good correlation would you create a Master Chronology .wid file and use that and go back into the Coorecorder process? For example, if you were pretty sure that the wood was European and from Germany would you just import the relevant .rwl files from Germany and look for a correlation? Sorry for the stupid questions, im just a bit confused about what to do if you have an unknown sample and can't find and videos that explain this. Thanks in advance.
Thank you so much for your videos, it helps me a lot in doing my thesis. I am having some problems, I don't find a way out. Hope I will get an answer from you. I made a single chronology for 5 species but need to make a composite chronology from them. I tried to find some papers but got no idea. Can you please, suggest me a way out? Looking forward to your videos regarding climate reconstruction.
thank you for this tutorial! wher can i find databank for european wood?
Love from Poland :) this really helped me to grasp the idea! Thank you soo much!
can you show the format of csv file of chronology table?
Outstanding tutorial. Right enough info to do the job. I've compiled one myself, but this one is way better. I recommend this to my students.
Dear Maxwell, great tutorials, thank you, amigo. I just have a couple of questions with regard to this function. As I am only using CWD (from 1975:2011) as clim.dat and tr. chrono (1960:2011), I am not being able to run the previous year, also when I input: selection= .mean(6:8), the package cries this: treeclim needs at least two var. for calibration. So, I am only running selection= 6:8, in either static or evolving. Because for FIN cwd values are mostly in the summer.
Hi Diego - I believe there is a limitation in how the function runs that requires it to have at least two variables but your solution looks like it should work to see the monthly results. You might try the .mean function and a second argument to have two variables. I'd have to dig into the code to see what's going on.
@@rawkton Thank you very much amigo, I am gonna check it out.
Hi dear Dr. Stockton Maxwell, I have a query and i m looking forward for your kind response. Actually I am using r software for dendrochronological analysis. Could you please guide me about how to install latest version of it as many of the packages could not function in 4.2.1 version of r. Also i am anxiously waiting for your video on "defoliatR" for insect defoliage signals in tree cores. Video on named package will be a helping hand for studying tree on discussed parameters from moist and dry temperate mixed brodlef coniferous forests of Himalaya in Pakistan. Anxiously waiting for your kind reply. Regards: Amir Ali MPhil Scholar (Botany) Dendrochronology Laboratory Government College University Lahore, Pakistan.
Hi Amir - I'm happy to read that the video is helpful. I would suggest a quick search on RUclips to learn how to update R, Rstudio, and the associated packages.
Hi Dr. Maxell, very helpful videos and appreciate your efforts to reach us like beginners through science! I would like to cross-date my samples collected from Wisconsin. Where can I get or how can I establish a master chronology for my study species?
Dr. Maxwell, Thank you so much for this helpful video. Its a true gift to those of us just starting out. Question for you - I used Coorecorder to measure my cores and Cdendro for cross-dating/preparing my .rwl files to read into dplR. Curious if you could describe the approach for averaging multiple cores from a single tree before standardization. In your video, it appeared that you had two cores from at least a portion of your trees as well. I am familiar with the treemean () function in dplR, but I am not sure how to format the data appropriately with a tree id column and a core column. Any ideas here?
thanks a lot for the video
up to date, this is really hepful and am glad you put up this information Dr. stockton
Many Thanks, Stockton...Great Job
I gotta error in line 35 . When I click run, it says: selu_final.rwl (no such file or directory).
If I want the climatic data of year 2020 then how could I get? There is the data of only 2010.
Thank you very much Stockton!
Can you just type the packages we need to install during the analysis. I am beginner and i m finding difficulties understanding the video because it was not much zoomed. Thank you in advance
Hi! Can you please tell me the alternative package for dcc to run climate data response ! Will be great full to you
The treeclim() package is the one you will need to run the dcc() function. You can also do climate-growth response analysis in other dendro packages like dendrotools() but this uses daily climate data.
thank you so very much Dr. Stockton Maxwell, Really helpful video
Thanks for the very nice tutorial! Im new in teh field of dendrochronology and have a question regarding the sample size. Is there a minimum length for serious evaluation using dplR? I have read in the dendrochronological literature that a minimum length of 40 years is recommended (Cook, E. R.; Kairiukstis, L. A. 1990). My series are very short, from 10 to 26 years. So it works, but are that reliable results?
I Pia. I'm happy that the video is helpful. Ideally, you should have segment lengths longer than 40 years or it can be difficult to find significant correlations across tree-ring series. You can adjust some settings to run shorter segments in dplR or xdateR or the Cdendro program but you would need very high correlations for them to be significant. With short tree-ring series, you might need to depend on visual crossdating with marker rings (drought or cold years causing narrow rings).
Dr. Maxwell, many thanks for your helpful tutorial! A quick troubleshooting question for you. After loading in a .rwl file, I am getting tripped up when I then select “Test towards ref.” with an error message popping up asking me to “Please, first select a sample as a Reference for the analysis!”. Prior to this step I had created a mean sample value and saved a .fil and wid file as you recommended in your video. Any thoughts about how to proceed?
Once you calculate your sample mean or open a .wid file, you should see an option to set as reference in the window in which the curve is displayed. It will remain the reference only as long as you have the program open. Then you can test towards reference.
Hello sir how can we separate growth of climate because growth of tree effect from many thing such as soil, elevation, aspect etc so how can we find growth with respect to climate only
That's a great question but a complex answer. I would recommend reading Fundamentals of Tree Ring Science by Jim Speer to get a better understanding of how dendrochronologist to address such questions. Basically, we need to select a specific site and species for different questions. Then, we should use techniques appropriate to the objective. Ecology is never simple so we need to consider interactions. You should attend the North American Dendroecological Fieldweek if you get a chance!
Which tree species is?
Brazil nut tree, Bertholletia excelsa
@@rawkton hello Sir i really want to talk to you in private
amazing video Stockton! Was just wondering if there was a way to colour the individual lines of the spag.plot?
Excellent tutorial, thank you very much for producing it for all of us! Question, I have found that sometimes when I go to add a ring boundary that didn't get picked up in the first auto placing pass, the ring sometimes gets labeled as the next successive ring after the oldest (inner ring). Is there a way to manually assign the proper year?
I have found that erasing a group of preceding points and then remeasuring does seem to restore proper numbering.
Thank you so much for this and providing the code as well. It was so helpful! :)
Professor Stockhon, thank you very much and congratulations for this very didactic video. Could you also add the footnotes in this video to allow a good understanding? I, for example, do not understand the American accent very well.
Thank you very much for this content. Really good tutorial.
This looks nice, wish I'd studied at Radford University :-)
Hi, i´m start todo do some process in R, but i don´t know how create or generate .rwl docs or archives? how i can generate that? i see this format of docs in your code, for that i'm ask me
Hi Gustavo - to create rwl files watch my videos on CooRecorder and Cdendro. You can also download open source data from the International Tree Ring Data Bank.
Thank's @@rawkton, i wil watch this videos, thank´s for answer
I really like this video, thank you a lot.
Thanks Stockton, love your tutorials, it is indeed very helpful.
Wow...Didn't see this before
This is helpful.... I have understood everything
Helpful