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Anyone knows how to solve "itk only supports orthonormal direction cosines. no orthonormal definition found"?

Anyone knows how to solve "itk only supports orthonormal direction cosines. no orthonormal definition found"?

Anyone knows how to solve "itk only supports orthonormal direction cosines. no orthonormal definition found"?

Anyone knows how to solve "itk only supports orthonormal direction cosines. no orthonormal definition found"?

where is session 1

9 years past. ITK-SNAP is still my goto and favorite tool for medical image visualization and annotation!

having trouble with my 3d updates not popping up when hitting update?

Can the volume of the tumor in voxels be determined ?

Are there other software for skull stripping other than ITK ? specially for CTA? Thanks

This unfortunately is not working for ne, can you help please?

is this integrated into 3D slicer as "grow from a seed"

Hello , Can you please tell how can I see the 3D view after I save my segmentations? Like when I open my segmented images again I cant see the 3D view.

Hello Sir, Greetings!! Thank you very much for useful information. Whenever I save file, the changes is not reflected in save file. How to save file?

Thank you... for the segmentation methods called atlas or template in this software or itksnap If you have any information, please send it to me. thank regards " sharifisara7373@gmail.com"

Cost of this software

How to save the registered image?...Tried saving the registered image but image isn't saved in the new registered orientation

How can I download the placenta protocol file ?

www.researchgate.net/publication/313457436_A_semi-automatic_method_for_carotid_artery_wall_segmentation_in_MR_images

How you obtained the view in 3d space?ruclips.net/video/C6KZoRtf2Jk/видео.html

I need placentaUS.nii.gz. help me!!!!

Can you send me this super fetal image file? I really need it. Thank you

Hi itksnap-users, As explained in 3:41.... I would like to load different niftii images from command line, in tile view as follow: prior_timepoint [FLRnii-w/FLR(brainmask)nii segmentation ] prior_timepoint [T1nii-w/T1(mask)nii segmentation] current_timepoint [FLRnii-w/FLR(brainmask)nii segmentation ] current_timepoint [T1nii-w/T1(mask)nii segmentation] in short, is this tile view (explained above) possible w/ a command line argument, with the current itk-snap version? Thank very much, Rodrigo

hi I still don't understand how to use 3d Scalpel

Really cool！！

Thanks very much for the video, very educational and useful. After doing the volume rendering,how can I find out the size of the object?

how can I install it?

I am with the new version of ITK-SNAP and I am struggling with this tutorial, because I cant find several things. For instance, I cannot find the item to fullfill the polygonal draw after I end of do it with the mouse. Could you help me? Thanks!

Very interesting video, thanks for developing that wonderful tool ! I'm using it in my 3D printing heart valve project. Cheers to the guy sneezing by the way !

Hi, I am a mechanical Engineering student. Currently I am doing my final year project. I need to use the MRI that I have to reconstruct the 3D CSF space, Is it possible to convert the file format to IGES by using other software? I have save the files in .mha, .gipl,.nifti. Thank you.

it has been very usefull, thank you

Also, setting a different origin is a nightmare. That cursor position illustrating the slice location is no bueno for acpc allignment. Using the image information got me a little bit further but still very hard to pull off. This tool has everything in place for this! Anyways, I do understand this program is made on a volunteer basis but hope to see this incorporated in future versions.

I think the gridline preferences for the registration aren't working as expected on Ubuntu 16.04. The thickness won't adjust below a value of 0.5 or even 1 maybe. This means that as soon as you press the 'interactive Tool' button, the gridlines are just obnoxiously blocking your view and it's hard o even see the AC or PC. It's a shame because this tool looks way easier to use than any of the SPM/matlab/Slicer options I've seen. Also, would it be an idea to add an 'opacity' option for the lines?

Dear ITK-SNAP team, thank you so much for this video and for your tools - they have been very helpful. I have been using them to segment resection areas on post-surgical structural scans. When using the classification approach (within the segment 3D) options, if you by any reason leave the opacity of the desired label to 0, after you select the bubble for initialisation, you won't be able to perform the evolution step. It will then force you to go back one step, change the opacity to a non zero value and going back again to the last step. I know this is a very small bug but I have found that it can however break the last part of the process - just wanted to let you know. I will continue to use your software and am looking forward for more developments! Best regards

I wonder if we could manually change the segmentation？Thank you!

This software is really awesome!

can i have your email please ? i am asked to do a project using itk snap and need your help. i can pay you for that

Dear ITK SNAP, I need help with a problem. When I use this program on the original nii file which is in 4D it works fine, but when I average out all the values across all 4d k spaces volumes and turn it into a 3d matrix, it doesn't work despite looking very similar. The speed image stuffs up. Can you explain what could be going wrong, doubt its a classification problem as the image looks very similar.

hey thanks 4 the amazing software.

The ITK-SNAP site is down at the moment. Any idea when it will be up again?

Hi. Can I ask for some advice? I am trying to segment the human lower limb into left/right and above-knee and below-knee muscle volumes minus the bone other structures. Do you have any tips?? Cheers,