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Добавлен 19 май 2020
Omics Portal For Addiction Research
Webinar #26-Genome-wide Association Study Summary Statistics. Where to find them and how to use them
This presentation will guide attendees with how to access genome-wide association study summary statistics and showcase resources available for annotating these summary data for follow-up analyses, including gene-based analyses, eQTL, and epigenetic annotation as well as causal variable analysis. We will guide attendees through components of a GWAS summary dataset and two excellent resources - FUMA and MASSIVE - that use these summary files as inputs to generate vast amounts of annotations that can be brought forward to answer translational research questions.
Funding provided by NIH/NIDA: DA054869, T32DA007261, K02DA032573.
Presented by:
Dr. Arpana Agrawal and Dr. Alexander S. Hatoum
Departm...
Funding provided by NIH/NIDA: DA054869, T32DA007261, K02DA032573.
Presented by:
Dr. Arpana Agrawal and Dr. Alexander S. Hatoum
Departm...
Просмотров: 5 501
Видео
Webinar #25 -Mouse Phenome Database: Analysis tools for mouse phenotype and genotype data
Просмотров 2802 года назад
Webinar #25 - Mouse Phenome Database: Resources and analysis tools for curated and integrated primary mouse phenotype and genotype data Abstract: The Mouse Phenome Database (MPD; phenome.jax.org) is a widely used resource that provides access to primary experimental data, protocols, and analysis tools for mouse phenotyping studies. Data are contributed by investigators around the world and repr...
Webinar#24 HiDiver: A Suite of Methods to Merge Magnetic Resonance Histology, Light Sheet Microscopy
Просмотров 1422 года назад
Webinar #24 - HiDiver: A Suite of Methods to Merge Magnetic Resonance Histology, Light Sheet Microscopy, and Complete Brain Delineations We have developed new imaging and computational workflows to produce accurately aligned multimodal 3D images of the mouse brain that exploit high resolution magnetic resonance histology (MRH) and light sheet microscopy (LSM) with fully rendered 3D reference de...
Webinar #23 Julia: a fast, friendly, and powerful language for data science
Просмотров 3272 года назад
Julia is a high-level dynamic programming language that is gaining popularity. The Julia language is designed for scientific computing and offers several attractive features for data science applications. In this webinar, we will make a case for why a data scientist might consider taking a serious look at Julia. We will show code examples and point the audience to further resources. Goals of th...
Webinar #22 - Guide to evaluating the application of machine learning methods in genetics literature
Просмотров 1472 года назад
Goals of this webinar: To describe the relationship between artificial intelligence (AI), machine learning (ML), and deep learning (DL). To describe general scenarios when ML is appropriate. To understand methods for comparing the performance of different ML algorithms To layout general criteria to examine when evaluating literature that includes machine learning algorithms Presented by: Dr. La...
Webinar #21 - A Primer on Brain Proteomics and protein-QTL Analysis for Substance Use Disorders
Просмотров 1622 года назад
Goals of this webinar: To give a general introduction to proteomics technologies and data processing/normalization To present a pipeline for correcting sample mix-ups in proteomic data. To discuss rat brain proteome and protein QTL analysis for Substance Use Disorders. Presented by: Xusheng Wang, PhD Assistant Professor Department of Biology University of North Dakota Dr. Rob Williams Professor...
Webinar #20 - Organizing data in spreadsheets
Просмотров 3933 года назад
Summary of this webinar: Spreadsheets are widely used software tools for data entry, storage, analysis, and visualization. Focusing on the data entry and storage aspects, this presentation will offer practical recommendations for organizing spreadsheet data to reduce errors and ease later analyses. The basic principles are: be consistent, write dates like YYYY-MM-DD, do not leave any cells empt...
Webinar#19 A Rube Goldbergian Approach to Scheduling Rodent Behavior Experiments and Data Collection
Просмотров 1303 года назад
Summary of this webinar: Large-scale rodent behavioral experiments with complicated testing procedures conducted over several years (e.g., genetic mapping of operant drug taking) need rigorous control on the quality of the data. This webinar will discuss methods used in my lab where we generate ready to use MedPC macros from a spreadsheet for new test sessions, cell phone notification on the co...
Webinar #18 - Introduction to the Methylome: Technologies and Analysis
Просмотров 1,3 тыс.3 года назад
Goals of this webinar: Studying DNA methylation is widespread in biomedical research. The goals of this webinar are: To describe research questions that can be explored by profiling the methylome To give a general overview of DNA methylation profiling technologies To outline steps in DNA methylation analysis pipeline To provide information on common resources and databases Presented by: Katerin...
Webinar #17 - Identifying sample mix-ups in eQTL data
Просмотров 1593 года назад
Presented by Karl Broman, PhD Biostatistics & Medical Informatics, University of Wisconsin, Madison kbroman.org github.com/kbroman Slides: kbroman.org/Talk_OSGA2021
Webinar #16 - Introduction to the Hybrid Rat Diversity Panel
Просмотров 1943 года назад
Webinar #16 - Introduction to the Hybrid Rat Diversity Panel: A renewable rat panel for genetic studies of addiction-related traits. Goals of this webinar: The Hybrid Rat Diversity Panel (HRDP) is an inbred panel of rats that included two recombinant inbred panels and a panel of classic inbred strains. To describe hybrid diversity panels, in particular, the HRDP, including advantages and disadv...
Webinar #15 - Introduction to Metabolomics Platforms and Data Analysis
Просмотров 2,1 тыс.3 года назад
Goals of this webinar: The use of metabolomics to profile small molecules is now widespread in biomedical research. The goals of this webinar are: To describe research questions that can be addressed using metabolomics To give a general overview of metabolomics technologies To outline steps in a metabolomics data analysis pipeline To provide information on common resources and databases Present...
Webinar #14 - Landing on Jupyter: A guided tour of interactive notebooks
Просмотров 2403 года назад
Jupyter is an interactive interface to data science and scientific computing across a variety of programming languages. We will present the Jupyter notebook, and explain some key concepts (e.g., kernel, cells). We will show how to create a new notebook; modify an existing notebook; save, export, and publish a notebook. We will discuss several possible use cases: developing code, writing reports...
Webinar #13 - Become a UseR: A brief tour of R
Просмотров 2903 года назад
We will introduce R programming language and outline the benefits of learning R. We will give a brief tour of basic concepts and tasks: variables, objects, functions, basic statistics, visualization, and data import/export. We will showcase a practical example demonstrating statistical analysis. Goals of this webinar: Why should one use/learn R? How to install R/Rstudio Learn about R basics: va...
Webinar12-From GWAS to gene:What are the essential analyses and how to bring them together using HSR
Просмотров 1,2 тыс.3 года назад
Webinar #12 - From GWAS to gene: what are the essential analyses and how do we bring them together using heterogeneous stock rats? Presented by Abraham A. Palmer, Ph.D. Professor & Vice Chair for Basic Research Department of Psychiatry University of California San Diego Goals of this webinar: Heterogeneous stock (HS) rats are an outbred population that was created in 1984 by intercrossing 8 inb...
Webinar #11 - Beginner's guide to bulk RNA-Seq analysis
Просмотров 16 тыс.3 года назад
Webinar #11 - Beginner's guide to bulk RNA-Seq analysis
Webinar #10 - Sketching alternate realities: An introduction to causal inference in genetic studies
Просмотров 983 года назад
Webinar #10 - Sketching alternate realities: An introduction to causal inference in genetic studies
Introduction to GeneWeaver: Integrating and analyzing heterogeneous functional genomics data
Просмотров 3213 года назад
Introduction to GeneWeaver: Integrating and analyzing heterogeneous functional genomics data
Webinar #8 - Using genetic and non-genetic covariates in QTL studies
Просмотров 2723 года назад
Webinar #8 - Using genetic and non-genetic covariates in QTL studies
Webinar #7 - Introduction to Weighted Gene Co-expression Network Analysis
Просмотров 11 тыс.4 года назад
Webinar #7 - Introduction to Weighted Gene Co-expression Network Analysis
Webinar #6 - Sex as a Biological Covariate in QTL Studies
Просмотров 2434 года назад
Webinar #6 - Sex as a Biological Covariate in QTL Studies
Webinar #5 - Identifying genes from QTL using RNA expression and the PhenoGen website (phenogen.org)
Просмотров 3314 года назад
Webinar #5 - Identifying genes from QTL using RNA expression and the PhenoGen website (phenogen.org)
Webinar #4 - From Candidate Genes to Causal Variants.
Просмотров 6134 года назад
Webinar #4 - From Candidate Genes to Causal Variants.
Webinar #3 - Intro to expression eQTL & their role in connecting QTL to genes and molecular networks
Просмотров 3,9 тыс.4 года назад
Webinar #3 - Intro to expression eQTL & their role in connecting QTL to genes and molecular networks
Webinar #2 -Mapping Addiction and Behavioral Traits Getting at Causal Gene Variants with GeneNetwork
Просмотров 7364 года назад
Webinar #2 -Mapping Addiction and Behavioral Traits Getting at Causal Gene Variants with GeneNetwork
Webinar #1 - Introduction to Quantitative Trait Loci (QTL) Analysis
Просмотров 4,6 тыс.4 года назад
Webinar #1 - Introduction to Quantitative Trait Loci (QTL) Analysis