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there is single bond in my structure but i want to change it into double bond. i hope you can help!

Great guideline! Thanks a lot😊

VERY GOOD

We can clear the work by clicking on file then close session instead of closing the software.

very informative, very demure. thank you so muchh

I need help in docking

in my case command line residues are not showing and also binding pockets are not showing the residues.. what should I do?

Even after filling the gap in between the protein sequence, I am getting broken lines in my structure. How to fix it?

how can i get the link to download dynoplot

How do I recognize amino acids in the residues of binding site for a different proteins?

Great singing my friend!! Like 2

How do you know what net charge to add to the ligand during preparation? Should it always be 0? For example, I have downloaded ATP from PubChem. It has several deprotonated phosphate groups, do I need to specify in Chimera the negative3 charge? Thank you!

Sir why I can't paste the smiles from pubchem to ucsf chimera

I have a.a residues more than 5000, what to do in this case?

I have a.a residues more than 5000, what to do in this case?

​ @shayonbh_molmod hi can you please let me know how can i perform cross-correlation for a complex a receptor with small molecule ligand. as ligand has only one residue and donot contain CA . thank you.

I love you

For IUpred which score should I really look into the Iupred score or the ANCHOR score for predicting the IDR

I am new to bioinformatics, my question is what if % identity and Query coverage is less but the GMQE and Qmean score is good?, which factors are more important than the other when deciding on a good model? Again what does it mean when your swiss model has no QSQE score?

Can you explain the spaghetti model more? What do the different colors show ?

Hi sir，what should i do if swissmodel cannot find any matching template，because i am trying to predict a heteropentamer

Very best…! Amazing

During registration process.... We have to submit a academic e mail id.. But i don't have.... What should i do

Hello sir. what should be the selection parameter to be taken in to consideration for selecting template and what should be the percent identity for the template?

Having laboured through 3 other YT tutorials on this exact same topic, I can say this is far and away the best tutorial. I am left wondering if the other presenters actually knew what they were talking about. This tutorial is authoritative, straightforward and well presented - excellent stuff. Thank you.

Congratulations on the tutorial: I have a question How do I search for homology of a ligand that has no Fasta sequence?

so good sir

Great tutorial video. Thank you for creating this content.

I have dipole.xvg file for a protein , generated using gromacs. I will be a grt help if u tell me how to visualize THAT dipole moment along with protein in vmd!!!

There is an error shown - [Error 13] permission denied: complex.pdbqt. How to rectify???

Sir, is it necessary to validate proteins secondary structure using Prochek after loop refinement?

Plz make a video on how to do metal complexes docking

How to add atoms on missing residues?

i hope that you kindly share the R code sir, or your gituhub which posted about this code

It was very useful, thanks so much :")

Thank you. Please how can I get my binding site for command prompt

Thank you sir for the amazing video.

Good afternoon, could you send me the link you put in the url, please.

If I pass it’s coz of you thanks

Can we change Residue 1 to Residue number 96 but amino acid residue of whole chain is remain same as previous

Very informative lecture.

actual docking: 10:37

Thanks very much for this tutorial professor. Please Sir after doing redocking, if your ligand aligns with the cocrystallised ligand but doesn't have a good RMSd value which parameters can you modify to have a perfect alignment which will lead to a good RMSd value? Thanks

Can we change or alter the residues numbering in pymol?

Thank you very much. Could you let me know, how I can do this when missing resides are in the middle of protein?

Please Make a tutorial on complete MD Simulation..

Great job sir

How download auto dock vina.last step auto dock does no work.for window 10

Hi. How can I replace one metal with another on chimera?

Thank you Shayon