- Видео 192
- Просмотров 1 483 251
Farhan Haq
Пакистан
Добавлен 30 мар 2012
www.jgiconsulting.pk/research-development/
The channel is dedicated for developing skilled bioinformatics students and researchers. Our lectures and tutorials from interdisciplinary fields are recorded and uploaded here. The administrator and main instructor of this channel is a Professor of Bioinformatics in a renowned university of Pakistan.
We also provide bioinformatics solutions for our clients.
For business inquiries please contact
Farhan Haq, PhD
Senior Partner @ jgiconsulting
www.jgiconsulting.pk
farhan@jgiconsulting.pk
The channel is dedicated for developing skilled bioinformatics students and researchers. Our lectures and tutorials from interdisciplinary fields are recorded and uploaded here. The administrator and main instructor of this channel is a Professor of Bioinformatics in a renowned university of Pakistan.
We also provide bioinformatics solutions for our clients.
For business inquiries please contact
Farhan Haq, PhD
Senior Partner @ jgiconsulting
www.jgiconsulting.pk
farhan@jgiconsulting.pk
ExpressionProfiler: Integrative Genomic and Transcriptomic Pipeline
Contact us @ farhanhaqj@gmail.com for business or collaboration!
Просмотров: 98
Видео
miRNA expression analysis using R - Step by step guide
Просмотров 6632 месяца назад
#microRNA #datascience #genome How to perform step by step miRNA expression analysis # Load libraries library(affy) library(affyPLM) library(limma) library(affycomp) library(AgilentQC) # Set working directory to where CEL files are located setwd("E://miRNA/GSE66752_RAW/GSM1631463_179_NS.txt/") data_files - list.files(pattern = "*.txt") data - read.maimages(files = data_files, source = "agilent"...
Download Gene Sequence Using Python -
Просмотров 2442 месяца назад
#python #Biopython #DNA #Gene Following is code I used in the video from Bio import Entrez from Bio import SeqIO # Define the NCBI accession number for the gene you want to download accession_number = "NM_001126114" # Example: Human TP53 gene # Fetch the gene sequence from NCBI with Entrez.efetch(db="nucleotide", id=accession_number, rettype="fasta", retmode="text") as handle: record = SeqIO.re...
Read file in python using function - Code in description
Просмотров 623 месяца назад
#filehandling #reading def read_fasta_sequences(file_path): sequences = [] with open(file_path, 'r') as file: for line in file: line = line.strip() if not line.startswith(' '): sequences.append(line) return sequences # Replace 'your_file.fasta' with the path to your FASTA file file_path = 'your_file.fasta' sequences = read_fasta_sequences(file_path) # Print the sequences for seq in sequences: p...
Reading File In Python - File Handling - L7
Просмотров 755 месяцев назад
Reading File In Python - File Handling - L7
Python in Bioinformatics - L6 - Sequences
Просмотров 1186 месяцев назад
Python in Bioinformatics - L6 - Sequences
Python in Bioinformatics - L5 - if else elif Nested
Просмотров 5746 месяцев назад
Python in Bioinformatics - L5 - if else elif Nested
Python in Bioinformatics - L4 - Logical and Comparison Operators
Просмотров 687 месяцев назад
Python in Bioinformatics - L4 - Logical and Comparison Operators
Python in Bioinformatics - L3 - Expressions
Просмотров 1777 месяцев назад
Python in Bioinformatics - L3 - Expressions
Python in Bioinformatics - L2 - Datatypes and Variables
Просмотров 937 месяцев назад
Python in Bioinformatics - L2 - Datatypes and Variables
Python Basics - Installing Anaconda - Lecture 1
Просмотров 2207 месяцев назад
Python Basics - Installing Anaconda - Lecture 1
R and R studio installation - Simple Guide
Просмотров 13810 месяцев назад
R and R studio installation - Simple Guide
Correlation with R - simplest tutorial
Просмотров 89911 месяцев назад
Correlation with R - simplest tutorial
How to find gene information against a specific probe ID?
Просмотров 448Год назад
How to find gene information against a specific probe ID?
How to read large text file in windows ?
Просмотров 1,1 тыс.Год назад
How to read large text file in windows ?
Gene Set Enrichment Analysis . Simplest guide for biologists
Просмотров 10 тыс.Год назад
Gene Set Enrichment Analysis . Simplest guide for biologists
FASTQ to SAM - WGS Analysis - Step 5
Просмотров 2,2 тыс.Год назад
FASTQ to SAM - WGS Analysis - Step 5
Annotating reference genome for WGS analysis - Step 4
Просмотров 1,9 тыс.Год назад
Annotating reference genome for WGS analysis - Step 4
Download reference genome files for WGS analysis - Step 3
Просмотров 3,7 тыс.Год назад
Download reference genome files for WGS analysis - Step 3
Fastqc - Whole genome sequencing - Step 2
Просмотров 2,6 тыс.Год назад
Fastqc - Whole genome sequencing - Step 2
Download Fastq or SRA files - Whole Genome Sequencing Analysis. Step 1
Просмотров 8 тыс.Год назад
Download Fastq or SRA files - Whole Genome Sequencing Analysis. Step 1
Microarray expression analysis guide for biologists - Very easy and free software -TAC
Просмотров 1,2 тыс.2 года назад
Microarray expression analysis guide for biologists - Very easy and free software -TAC
How to use grep function in linux - Guide for beginners
Просмотров 1782 года назад
How to use grep function in linux - Guide for beginners
How to make a matrix file for differential expression analysis - Ubuntu
Просмотров 1,2 тыс.2 года назад
How to make a matrix file for differential expression analysis - Ubuntu
How to generate simple Heatmap - R Tutorials
Просмотров 1,3 тыс.2 года назад
How to generate simple Heatmap - R Tutorials
Downloading sequencing data on ubuntu/linux - SRA toolkit
Просмотров 15 тыс.2 года назад
Downloading sequencing data on ubuntu/linux - SRA toolkit
Caculate gene expression with FeatureCounts - Step 7
Просмотров 4,4 тыс.2 года назад
Caculate gene expression with FeatureCounts - Step 7
Indexing BAM file using samtools - Step 6
Просмотров 6 тыс.2 года назад
Indexing BAM file using samtools - Step 6