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radiomics.io
Добавлен 1 фев 2017
PyRadiomics: Open-source radiomics library written in python
Pyradiomics is an open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Image loading and preprocessing (e.g. resampling and cropping) are first done using SimpleITK. Loaded data is then converted into numpy arrays for further calculation using multiple feature classes. Optional filters are also built-in.
For more information visit:
www.radiomics.io
or drop us a line at:
info@radiomics.io
For more information visit:
www.radiomics.io
or drop us a line at:
info@radiomics.io
Просмотров: 44 844
This is so useful!
plss i need your help in how to use pyradiomics
How did you install Radiomics sir please? I am using Miniconda python version is 3.10 I am struggling couple weeks ago!
hello my friend! Did you manage to resolve the problem? I am struggling as well :(
@@bob81118 not yet. but we can work on it together if you want.
@@katienefoasoro1132 Excuse me! But did you manage to resolve the problem? I have been having the same issue for last 3 days
This tutorial could at least provide an example of a full analysis. Instead, the batch file is only vaguely described, without providing an example. Params file is also given only instructing to analyse original images, although there are important settings necessary for image transformations, such as LoG etc, which users are left to guess. A bit more effort would do a miracle to include non-coders. The instructions on the website do not give any more detailed information than provided here..
For the latest version, the name has been changed to RadiomicsFeatureExtractor()
is it possible to take simple screenshots from ct or mri scans as input files?
Does anyone here use pyradiomics to open dicom files? My images are in dicom files but pyradiomics seems to require nrrd file format. I also was not able to find a tutorial / example code on how to open a file. The jupyter notebook that they have on github only shows how to do this from the sample "test" file provided by the package itself.
Do you solve this problem? Extracting features using pyradiomics in DICOM images
This documentation article should answer your question: pyradiomics.readthedocs.io/en/latest/faq.html?what-file-types-are-supported-by-pyradiomics-for-input-image-and-mask
A plus to the Radiomics society
import os from radiomics import featureextractor testCase = 'brain1' dataDir = os.path.join(os.getcwd(),"..","data") print("dataDir, relative path:", dataDir) print("dataDir, absolute path:", os.path.abspath(dataDir)) imagePath = os.path.join(dataDir, testCase + "_image.nrrd") labelPath = os.path.join(dataDir, testCase + "_label.nrrd") paramPath = os.path.join(os.getcwd(),"..","Params.yaml") print("Parameter file, absolute path:", os.path.abspath(paramPath)) params = {} params['bandwidth'] = 20 params['sigma'] = [1,2,3] params['verbose'] = True extractor = featureextractor.RadiomicsFeaturesExtractor(**params) print("Extraction parameters: \t", extractor.kwargs) print("Enabled filters: \t", extractor.inputImages) print("Enabled features: \t", extractor.enabledFeaturs) --------------------------------------------------------------------------------------------------------------------------------- AttributeError Traceback (most recent call last) <ipython-input-9-9ea6b907bdb1> in <module>() 7 extractor = featureextractor.RadiomicsFeaturesExtractor(**params) 8 ----> 9 print("Extraction parameters: \t", extractor.kwargs) 10 print("Enabled filters: \t", extractor.inputImages) 11 print("Enabled features: \t", extractor.enabledFeaturs) AttributeError: 'RadiomicsFeaturesExtractor' object has no attribute 'kwargs'
error: could not create 'pyradiomics.egg-info': Access is denied
Thank you for sharing. this python package make my research life easier.
This is a great contribution to the community. Thanks for the video.